Jatropha Genome Database

JcCA0020001.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0020001.20 - phase: 0 
         (470 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012644001 assembled CDS                                       656   0.0  
GSVIVT01001997001 assembled CDS                                       565   e-161
GSVIVT01036477001 assembled CDS                                       106   3e-23

>GSVIVT01012644001 assembled CDS
          Length = 407

 Score =  656 bits (1693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/384 (79%), Positives = 349/384 (90%)

Query: 74  GKFGRFGGNYVPEILVACLRELETQFISALRDPLFQEELATALRDYVGRETPLYFAERLT 133
           GKFGRFGG +VPE L+ CL +LE +F   L DP FQEELATALRDYVGRETPLYFA+RLT
Sbjct: 6   GKFGRFGGKFVPETLMTCLSKLEAEFNLVLHDPEFQEELATALRDYVGRETPLYFAQRLT 65

Query: 134 NHYKKEDGKGPEIYLKREDLNHCGAHKMNNAIAQAMIAKRMGLKSVVAATGAGQHGVATA 193
           +HYK E G GPEIYLKREDLNH GAHK+NNAIAQAMIAKRMG  S+VAATGAGQHGVATA
Sbjct: 66  DHYKNESGCGPEIYLKREDLNHGGAHKINNAIAQAMIAKRMGRTSIVAATGAGQHGVATA 125

Query: 194 AACAKLSLECTVLMGTTDMEKQSSNVLLMKLLGAQVKAVNGNFKDASSEAVREWVGNLET 253
           AACAKLSL+CT++MGT DME+Q+SNVLLMKLLGA+VK+V+GNFK+A+SEA+REWVGNLET
Sbjct: 126 AACAKLSLKCTIVMGTLDMERQASNVLLMKLLGAEVKSVDGNFKNATSEAIREWVGNLET 185

Query: 254 SYYLSGTAVGPHPCPTMVRQFQSVIGKEIRKQAMEKWGGKPDVLIACVGSGSNALGAFYE 313
           +Y+L GTAVGPHPCP+MVR+FQS+IGKE R+QAME+WG KPDVL+ACVGSGSNALG F+E
Sbjct: 186 NYFLIGTAVGPHPCPSMVREFQSIIGKETRRQAMERWGRKPDVLVACVGSGSNALGLFHE 245

Query: 314 FIEDEDVRLIGVEAAGFGLDSGKHAATLAMGDVGVYHGAMSYLLQDEEGQILGPHSIGVG 373
           FI DEDVR+IGVEAAGFGL+SGKH+ATLA G+VGVYHGAMSYLLQDEEGQI+GPHSIGVG
Sbjct: 246 FIADEDVRMIGVEAAGFGLESGKHSATLAKGEVGVYHGAMSYLLQDEEGQIVGPHSIGVG 305

Query: 374 LEYPGVSPELSLLKETKRAEFYSATDKEAVEAFKRLCKLEGIIPALEASHALAFLEKLCP 433
           +EYPGVSPELS LKET R E YS TD+EAV+A++ LC+LEGI PALEASHALAFL+KLCP
Sbjct: 306 MEYPGVSPELSFLKETGRVESYSVTDQEAVDAYQLLCRLEGIFPALEASHALAFLDKLCP 365

Query: 434 TLPSGIKIIVNCSGVGDKDAATVL 457
           TLP G K++VNCSG GDKDA TV 
Sbjct: 366 TLPDGGKVVVNCSGRGDKDAPTVF 389


>GSVIVT01001997001 assembled CDS
          Length = 407

 Score =  565 bits (1455), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 261/389 (67%), Positives = 318/389 (81%), Gaps = 3/389 (0%)

Query: 74  GKFGRFGGNYVPEILVACLRELETQFISALRDPLFQEELATALRDYVGRETPLYFAERLT 133
           G+FG+FGG YVPE L+  L ELE+ F +   D  FQ+EL   L+DYVGRE+PLYFAERLT
Sbjct: 16  GRFGKFGGKYVPETLMHALTELESAFRALSGDVEFQKELDGILKDYVGRESPLYFAERLT 75

Query: 134 NHYKKEDGKGPEIYLKREDLNHCGAHKMNNAIAQAMIAKRMGLKSVVAATGAGQHGVATA 193
            HYK+ +G+GP IYLKREDLNH GAHK+NNA+AQA++AKR+G   ++A TGAGQHGVATA
Sbjct: 76  EHYKRHNGEGPLIYLKREDLNHTGAHKINNAVAQALLAKRLGKTRIIAETGAGQHGVATA 135

Query: 194 AACAKLSLECTVLMGTTDMEKQSSNVLLMKLLGAQVKAVNG---NFKDASSEAVREWVGN 250
             CA+  L+C V MG  DME+Q+ NV  M+LLGA+V+AV+      KDA+SEA+R+WV N
Sbjct: 136 TVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHAGTATLKDATSEAIRDWVTN 195

Query: 251 LETSYYLSGTAVGPHPCPTMVRQFQSVIGKEIRKQAMEKWGGKPDVLIACVGSGSNALGA 310
           +ET++Y+ G+  GPHP P MVR F +VIGKE RKQAMEKWGGKPDVL+ACVG GSNA+G 
Sbjct: 196 VETTHYILGSVAGPHPYPMMVRDFHAVIGKETRKQAMEKWGGKPDVLVACVGGGSNAMGL 255

Query: 311 FYEFIEDEDVRLIGVEAAGFGLDSGKHAATLAMGDVGVYHGAMSYLLQDEEGQILGPHSI 370
           FYEF++DEDVRLIGVEAAGFGLDSGKHAATL  G+VGV HGAMSYLLQD++GQI+ PHSI
Sbjct: 256 FYEFVDDEDVRLIGVEAAGFGLDSGKHAATLTRGEVGVLHGAMSYLLQDDDGQIIEPHSI 315

Query: 371 GVGLEYPGVSPELSLLKETKRAEFYSATDKEAVEAFKRLCKLEGIIPALEASHALAFLEK 430
             GL+YPGV PE S LK+  RAE++S TD+EA+EAFKRL +LEGIIPALE SHALA+LEK
Sbjct: 316 SAGLDYPGVGPEHSFLKDLGRAEYHSITDEEALEAFKRLSRLEGIIPALETSHALAYLEK 375

Query: 431 LCPTLPSGIKIIVNCSGVGDKDAATVLNY 459
           LCPTLP+G K+++NCSG GDKD  T + +
Sbjct: 376 LCPTLPNGTKVVLNCSGRGDKDVHTAIKH 404


>GSVIVT01036477001 assembled CDS
          Length = 495

 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 108/358 (30%), Positives = 153/358 (42%), Gaps = 44/358 (12%)

Query: 94  ELETQFISALRDPLFQEELATALRDYVGRETPLYFAERLTNHYKKEDGKGPEIYLKREDL 153
           EL  Q  S  R     EE+    R +  R TPL  A+RL    +K       IY K E +
Sbjct: 94  ELIKQEASTDRFIAIPEEVIDVYRLW--RPTPLIRAKRL----EKLLDTPARIYYKYEGV 147

Query: 154 NHCGAHKMNNAIAQAMIAKRMGLKSVVAATGAGQHGVATAAACAKLSLECTVLMGTTDME 213
           +  G+HK N A+ Q     + G+KSV   TGAGQ G + A AC+   L+C V       +
Sbjct: 148 SPAGSHKPNTAVPQVWYNAQEGVKSVTTETGAGQWGSSLAFACSLFGLDCEVWQVRASYD 207

Query: 214 KQSSNVLLMKLLGAQVKAVNGNFKDASSEAVR---EWVGNL---------------ETSY 255
           ++    L+M+  GA+V     +  +A  + ++      G+L               +T Y
Sbjct: 208 QKPYRNLMMQTWGAKVHPSPSSITEAGRKILQMNPSSPGSLGIAISEAVEVAAANADTKY 267

Query: 256 YLSGTAVGPHPCPTMVRQFQSVIGKEIRKQAMEKWGGKPDVLIACVGSGSNALGAFYEFI 315
            L             V   Q+VIG+E  KQ ME  G  PDV+I C G GSN  G  + FI
Sbjct: 268 CLGSVL-------NHVLLHQTVIGEECIKQ-MEAIGETPDVIIGCTGGGSNFGGLTFPFI 319

Query: 316 EDE-----DVRLIGVE-AAGFGLDSGKHAATLAMGDVGVYHGAMSYLLQDEEGQILGPHS 369
            ++     +  +  VE  A   L  G +A      D G   G    +     G    P  
Sbjct: 320 REKLKGRINPLIRAVEPTACPSLTKGVYAY-----DYGDTAGMTPLMKMHTLGHDFVPDP 374

Query: 370 IGV-GLEYPGVSPELSLLKETKRAEFYSATDKEAVEAFKRLCKLEGIIPALEASHALA 426
           I   GL Y G++P LS + E    E  S    E  +   +  + EG+IPA E +HA+A
Sbjct: 375 IHAGGLRYHGMAPLLSHVYELGFMEAISIPQIECFQGAIQFARTEGLIPAPEPTHAIA 432