Jatropha Genome Database

JcCA0020001.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0020001.10 + phase: 0 /pseudo/partial
         (672 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012646001 assembled CDS                                       433   e-121
GSVIVT01033783001 assembled CDS                                       147   1e-35

>GSVIVT01012646001 assembled CDS
          Length = 1003

 Score =  433 bits (1114), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 218/339 (64%), Positives = 247/339 (72%), Gaps = 30/339 (8%)

Query: 314 TKQPLLPSRHAT---LNQQNQAQVNHFQPQFLPSNEARENF-PLSISSLPHQTRVSTLDP 369
           +K P + +R A    LN +NQ QV   QPQFLP  E   NF P + + +   +    L+P
Sbjct: 676 SKLPQMANRQAGSIPLNGKNQTQVTRLQPQFLP-QETHGNFVPSTTAPVSSYSVAPPLNP 734

Query: 370 VHATQGHGAAMSMVRSNPVPFM-LPLPVNNIPNTLQXXXXXXXXXXXXXXXXQMIHVPQN 428
            +  QGH AA S +  NPVP +   +P++NI N+                         N
Sbjct: 735 GYTPQGHAAATSTILLNPVPGVHSSIPIHNISNS------------------------SN 770

Query: 429 VGPVAPNQPPGSAFSGLIGSLMAQGLISLTKQTPGQDSVGLEFNADLIKVRHESAISALY 488
            GP+  NQ PGSA SGLI SLMAQGLISL KQ   QDSVG+EFN DL+KVRHESAISALY
Sbjct: 771 TGPIVSNQQPGSALSGLISSLMAQGLISLAKQPTVQDSVGIEFNVDLLKVRHESAISALY 830

Query: 489 ADLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKNRKHKPSRKWFVDTSMWLSGAEALG 548
            D+ RQCTTCGLRFKCQEEHSSHMDWHVTKNR+SKNRK KPSRKWFV  SMWLS AEALG
Sbjct: 831 GDMSRQCTTCGLRFKCQEEHSSHMDWHVTKNRISKNRKQKPSRKWFVSASMWLSSAEALG 890

Query: 549 TDAVPGFLPTESVVEKKDDEEMAVPADEEQNACALCGEPFDDFYSDETEEWMYKGAVYMN 608
           TDAVPGFLPTE++ EKKDDEE+AVPADE+QN CALCGEPFDDFYSDETEEWMYKGAVY+N
Sbjct: 891 TDAVPGFLPTETIAEKKDDEELAVPADEDQNVCALCGEPFDDFYSDETEEWMYKGAVYLN 950

Query: 609 APNGSTAGMERSQLGPIVHAKCRSESSVAPPEDFRCDDG 647
           AP GS AGM+RSQLGPIVHAKCRSES+V  PEDF  D+G
Sbjct: 951 APEGSAAGMDRSQLGPIVHAKCRSESNVVSPEDFGQDEG 989


>GSVIVT01033783001 assembled CDS
          Length = 1049

 Score =  147 bits (372), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 78/189 (41%), Positives = 112/189 (59%), Gaps = 7/189 (3%)

Query: 451  AQGLISLTKQTPGQ--DSVGLEFNADLIKVRHESAISALYADLPRQCTTCGLRFKCQEEH 508
            A+  +++T+ T  +  + +G EF +D+I+  H S IS L+ DLP QC+ CGLR K +E  
Sbjct: 850  AKASVAVTQSTSVEVKNLIGFEFKSDIIRESHPSVISELFDDLPHQCSICGLRLKLRERL 909

Query: 509  SSHMDWHVTKNRMSKNRKHKPSRKWFVDTSMWLSGAEALGTDAVPGFLPTESVVEKKDDE 568
              H++WH  K +   N  ++ SR WFV++  W++      T+A       ES    +  E
Sbjct: 910  DRHLEWHALK-KSEPNGLNRASRSWFVNSGEWIAEVAGFPTEAKSTSPAGESGKPLETSE 968

Query: 569  EMAVPADEEQNACALCGEPFDDFYSDETEEWMYKGAVYMNAPN-GSTAGMERSQLGPIVH 627
            +M VPADE Q  C LCGE F+DFYS E ++WM++GAV M  P+ G   G +    GPIVH
Sbjct: 969  QM-VPADENQCVCVLCGEVFEDFYSQEMDKWMFRGAVKMTVPSQGGELGTKNQ--GPIVH 1025

Query: 628  AKCRSESSV 636
            A C +ESSV
Sbjct: 1026 ADCITESSV 1034