Jatropha Genome Database

JcCA0019701.60
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0019701.60 + phase: 0 /pseudo
         (93 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011026001 assembled CDS                                       167   9e-43
GSVIVT01037591001 assembled CDS                                        92   4e-20
GSVIVT01034615001 assembled CDS                                        91   1e-19

>GSVIVT01011026001 assembled CDS
          Length = 888

 Score =  167 bits (423), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 78/87 (89%), Positives = 83/87 (95%)

Query: 2  GSKPWLHPAPTYRPLETYWDTDEDAPGPRCGHTLTAVAATNSHGPRLILFGGATAIEGGG 61
          GSKPWL+PAPTYR LE+YWDTD+DAPGPRCGHTLTA+A T +HGPRLILFGGATAIEGG 
Sbjct: 3  GSKPWLYPAPTYRTLESYWDTDDDAPGPRCGHTLTAIAPTKTHGPRLILFGGATAIEGGA 62

Query: 62 SSSAPGIRLAGVTNSVHSYDVLTRKWT 88
          SSSAPGIRLAGVTNSVHSYDVLTRKWT
Sbjct: 63 SSSAPGIRLAGVTNSVHSYDVLTRKWT 89


>GSVIVT01037591001 assembled CDS
          Length = 1049

 Score = 92.4 bits (228), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 50/92 (54%), Positives = 58/92 (63%), Gaps = 13/92 (14%)

Query: 10  APTYRPLETYWDTDEDAPGPRCGHTLTAVAATNSH------GPRLILFGGATAIEGGGSS 63
           APTY  +    +  ED PGPRCGHTLTAVAA          GPRLILFGGATA+EG  ++
Sbjct: 43  APTYSVVNAVIEKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAA 102

Query: 64  S-------APGIRLAGVTNSVHSYDVLTRKWT 88
           S       + GIRLAG T  VH YDV+T KW+
Sbjct: 103 SGTPSSAGSAGIRLAGATADVHCYDVITNKWS 134


>GSVIVT01034615001 assembled CDS
          Length = 928

 Score = 90.9 bits (224), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/91 (54%), Positives = 59/91 (64%), Gaps = 13/91 (14%)

Query: 11  PTYRPLETYWDTDEDAPGPRCGHTLTAVAATNSH------GPRLILFGGATAIEGG---- 60
           PTY P+ T  +  ED PGPRCGHTLTAVAA          GPRLILFGGATA+E      
Sbjct: 42  PTYFPVNTIIEKKEDNPGPRCGHTLTAVAAVGEEGSPGYIGPRLILFGGATALENNATTS 101

Query: 61  GSSSAPG---IRLAGVTNSVHSYDVLTRKWT 88
           G+ S+PG   IRLAG T  VH YD+ ++KW+
Sbjct: 102 GALSSPGSSSIRLAGATADVHCYDISSKKWS 132