Jatropha Genome Database

JcCA0019701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0019701.10 + phase: 0 
         (139 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011033001 assembled CDS                                       181   1e-46
GSVIVT01011034001 assembled CDS                                       170   2e-43
GSVIVT01002735001 assembled CDS                                       152   4e-38
GSVIVT01002746001 assembled CDS                                       152   7e-38
GSVIVT01014580001 assembled CDS                                       149   4e-37
GSVIVT01025019001 assembled CDS                                       129   4e-31
GSVIVT01031123001 assembled CDS                                       128   1e-30
GSVIVT01011029001 assembled CDS                                       110   2e-25
GSVIVT01025533001 assembled CDS                                        94   2e-20
GSVIVT01003502001 assembled CDS                                        86   6e-18
GSVIVT01035768001 assembled CDS                                        85   1e-17
GSVIVT01017218001 assembled CDS                                        84   2e-17
GSVIVT01003139001 assembled CDS                                        82   8e-17
GSVIVT01038390001 assembled CDS                                        48   1e-06

>GSVIVT01011033001 assembled CDS
          Length = 137

 Score =  181 bits (458), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 91/114 (79%), Positives = 94/114 (82%)

Query: 26  AGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVP 85
           AGLQFPVGRIARFLKAGKYA+RVGAGAP                  GNAARDNKK+RIVP
Sbjct: 24  AGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKSRIVP 83

Query: 86  RHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPKKMGKGKGDIGSASQEF 139
           RHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPKK G GKG+IGSASQEF
Sbjct: 84  RHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPKKTGAGKGEIGSASQEF 137


>GSVIVT01011034001 assembled CDS
          Length = 138

 Score =  170 bits (431), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 85/114 (74%), Positives = 91/114 (79%)

Query: 26  AGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVP 85
           AGLQFPVGRIARFLK G+YA RVG+G+P                  GNAARDNKKNRI+P
Sbjct: 25  AGLQFPVGRIARFLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIP 84

Query: 86  RHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPKKMGKGKGDIGSASQEF 139
           RHIQLAVRNDEEL KLLG VTIA+GGVLPNIHQNLLPKK GKGKG+IGSASQEF
Sbjct: 85  RHIQLAVRNDEELGKLLGGVTIASGGVLPNIHQNLLPKKTGKGKGEIGSASQEF 138


>GSVIVT01002735001 assembled CDS
          Length = 136

 Score =  152 bits (385), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 78/113 (69%), Positives = 83/113 (73%)

Query: 26  AGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVP 85
           AGLQFPVGRIARFLKAGKYA+RVGAGAP                  GNAARDNKK RIVP
Sbjct: 23  AGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVP 82

Query: 86  RHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPKKMGKGKGDIGSASQE 138
           RHIQLAVRNDEELSKLLG+VTIANGGV+PNIH  LLPKK    KG   +A  +
Sbjct: 83  RHIQLAVRNDEELSKLLGSVTIANGGVMPNIHNLLLPKKSSSSKGGAAAADDD 135


>GSVIVT01002746001 assembled CDS
          Length = 135

 Score =  152 bits (383), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 77/105 (73%), Positives = 80/105 (76%)

Query: 26  AGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVP 85
           AGLQFPVGRIARFLKAGKYA+RVGAGAP                  GNAARDNKK RIVP
Sbjct: 23  AGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVP 82

Query: 86  RHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPKKMGKGKG 130
           RHIQLAVRNDEELSKLLG+VTIANGGV+PNIH  LLPKK    KG
Sbjct: 83  RHIQLAVRNDEELSKLLGSVTIANGGVMPNIHNLLLPKKSSSSKG 127


>GSVIVT01014580001 assembled CDS
          Length = 135

 Score =  149 bits (376), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 76/101 (75%), Positives = 78/101 (77%)

Query: 26  AGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVP 85
           AGLQFPVGRIARFLKAGKYA+RVGAGAP                  GNAARDNKK RIVP
Sbjct: 23  AGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVP 82

Query: 86  RHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPKKMG 126
           RHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK G
Sbjct: 83  RHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAG 123


>GSVIVT01025019001 assembled CDS
          Length = 149

 Score =  129 bits (324), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 67/112 (59%), Positives = 76/112 (67%)

Query: 26  AGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVP 85
           AGLQFPVGRI R+LK G+Y+ RVG GAP                  GNAARDNKKNRI+P
Sbjct: 30  AGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIP 89

Query: 86  RHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPKKMGKGKGDIGSASQ 137
           RH+ LAVRNDEEL KLL  VTIA+GGVLPNI+  LLPKK  K   +  S S+
Sbjct: 90  RHVLLAVRNDEELGKLLSGVTIAHGGVLPNINPVLLPKKTDKATKEPKSPSK 141


>GSVIVT01031123001 assembled CDS
          Length = 137

 Score =  128 bits (321), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 67/99 (67%), Positives = 70/99 (70%)

Query: 26  AGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVP 85
           AGLQFPVGRIARFLK G+YA R G GAP                  GNAARDNKKNRI P
Sbjct: 28  AGLQFPVGRIARFLKTGRYAQRTGTGAPIYLAAVLEYLAAEVLELAGNAARDNKKNRISP 87

Query: 86  RHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPKK 124
           RH+ LAVRNDEEL KLL  VTIANGGVLPNI+  LLPKK
Sbjct: 88  RHVLLAVRNDEELGKLLRGVTIANGGVLPNINPVLLPKK 126


>GSVIVT01011029001 assembled CDS
          Length = 137

 Score =  110 bits (275), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/114 (51%), Positives = 75/114 (65%), Gaps = 2/114 (1%)

Query: 26  AGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVP 85
           AGLQFPVGRI+R +K G YA+RV   AP                  GN A+DN+K RI+P
Sbjct: 26  AGLQFPVGRISRLIKDGNYAERVSRTAPVYLSAVLEYLSAEVLELAGNVAKDNQKARILP 85

Query: 86  RHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPKKMGKGKGDIGSASQEF 139
           RHI  A+RND EL +LL  VTIA+GGVLPNI ++ LP++  KGKG+  SA++E 
Sbjct: 86  RHIVHAMRNDIELCRLLENVTIADGGVLPNIDEDFLPEE-EKGKGN-RSATEEL 137


>GSVIVT01025533001 assembled CDS
          Length = 122

 Score = 94.0 bits (232), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 57/90 (63%)

Query: 48  VGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTI 107
           VG GAP                  GNAARDNKKNRI+PRH+ LAVRNDEEL KLL  VTI
Sbjct: 25  VGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTI 84

Query: 108 ANGGVLPNIHQNLLPKKMGKGKGDIGSASQ 137
           A+GGVLPNI+  LLPKK  K   +  S S+
Sbjct: 85  AHGGVLPNINPVLLPKKSDKAAKEPKSPSK 114


>GSVIVT01003502001 assembled CDS
          Length = 135

 Score = 85.9 bits (211), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 52/66 (78%)

Query: 72  GNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPKKMGKGKGD 131
           GNAA DN+K+RI+PRH+ LAVRNDEEL KLL  VTIA+GGVLPNI+  LLPKK+ K   +
Sbjct: 62  GNAAWDNRKHRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKIDKTAKE 121

Query: 132 IGSASQ 137
             S S+
Sbjct: 122 PKSPSK 127


>GSVIVT01035768001 assembled CDS
          Length = 134

 Score = 84.7 bits (208), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 61/99 (61%), Gaps = 2/99 (2%)

Query: 26  AGLQFPVGRIARFLKAGKYAD-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIV 84
           AGLQFPVGRI R LK+   A+ RVGA A                   GNA++D K  RI 
Sbjct: 33  AGLQFPVGRIHRLLKSRVTANGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRIT 92

Query: 85  PRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPK 123
           PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ K
Sbjct: 93  PRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 130


>GSVIVT01017218001 assembled CDS
          Length = 136

 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 60/99 (60%), Gaps = 2/99 (2%)

Query: 26  AGLQFPVGRIARFLKAGKYAD-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIV 84
           AGLQFPVGR+ R LK    A+ RVGA A                   GNA++D K  RI 
Sbjct: 35  AGLQFPVGRVHRLLKTRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRIT 94

Query: 85  PRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPK 123
           PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ K
Sbjct: 95  PRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 132


>GSVIVT01003139001 assembled CDS
          Length = 133

 Score = 82.0 bits (201), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 60/99 (60%), Gaps = 2/99 (2%)

Query: 26  AGLQFPVGRIARFLKAGKYAD-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIV 84
           AG+QFPVGRI R LK+   A  RVGA A                   GNA++D K  RI 
Sbjct: 33  AGIQFPVGRIHRQLKSRISAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRIT 92

Query: 85  PRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPK 123
           PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ K
Sbjct: 93  PRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 130


>GSVIVT01038390001 assembled CDS
          Length = 142

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/28 (75%), Positives = 24/28 (85%)

Query: 76  RDNKKNRIVPRHIQLAVRNDEELSKLLG 103
           RDNKKNRI+ RH+ LA+RNDEEL KLL 
Sbjct: 115 RDNKKNRIILRHVLLAMRNDEELGKLLA 142