Jatropha Genome Database

JcCA0019191.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0019191.20 - phase: 0 /partial
         (153 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01004448001 assembled CDS                                       228   7e-61
GSVIVT01004722001 assembled CDS                                        67   4e-12

>GSVIVT01004448001 assembled CDS
          Length = 300

 Score =  228 bits (582), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 108/143 (75%), Positives = 121/143 (84%)

Query: 11  VVLIREFEVDFILLAGYLKLIPAELVQAYPKRILNIHPALLPAFGGKGYYGMKVHKAVIA 70
           V  +R FEVDFILLAGYLKLIP EL++AYPK ILNIHP+LLPAFGGKGYYGMKVHKAVIA
Sbjct: 158 VAALRGFEVDFILLAGYLKLIPVELIRAYPKSILNIHPSLLPAFGGKGYYGMKVHKAVIA 217

Query: 71  SGARYSGPTIHFVDEHYDTGLIIAQRVVPVLANDTXXXXXXXXXXXXXXXYVEVTAALCE 130
           SGARYSGPT+HFVDEHYDTG I+AQRVVPVLA+DT               YVEVT+ALC+
Sbjct: 218 SGARYSGPTVHFVDEHYDTGRILAQRVVPVLADDTADELAARVLHQEHRVYVEVTSALCD 277

Query: 131 ERIIWREDGVPLIRSRENPNQYS 153
           ERI+WREDGVP+I+S+ENPN YS
Sbjct: 278 ERIVWREDGVPIIQSKENPNDYS 300


>GSVIVT01004722001 assembled CDS
          Length = 329

 Score = 66.6 bits (161), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 5/126 (3%)

Query: 18  EVDFILLAGYLKLIPAELVQAYPKRILNIHPALLPAFGGKGYYGMKVHKAVIASGARYSG 77
           + DF++LA Y++++    +++Y K I+NIH  LLP+F G         K    +G +  G
Sbjct: 208 DTDFLVLARYMQILSGNFLKSYGKDIINIHHGLLPSFKGGN-----PSKQAFDAGVKLIG 262

Query: 78  PTIHFVDEHYDTGLIIAQRVVPVLANDTXXXXXXXXXXXXXXXYVEVTAALCEERIIWRE 137
            T HFV E  D G II Q V  V   D                 V+   + CE R++  E
Sbjct: 263 ATSHFVTEELDAGPIIGQMVERVCHRDNLKSFVQKSENLEKQCLVKAIKSYCELRVLPYE 322

Query: 138 DGVPLI 143
           D   ++
Sbjct: 323 DNKTVV 328