Jatropha Genome Database

JcCA0019191.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0019191.10 + phase: 1 /partial
         (108 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01006719001 assembled CDS                                       167   9e-43
GSVIVT01030034001 assembled CDS                                       159   2e-40
GSVIVT01037761001 assembled CDS                                       154   1e-38
GSVIVT01017860001 assembled CDS                                        80   2e-16

>GSVIVT01006719001 assembled CDS
          Length = 340

 Score =  167 bits (423), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 79/103 (76%), Positives = 94/103 (91%)

Query: 1   QLLGEILLDRSNTAVMVRYVSSKDNLRILMNLLRESSKNIQIDAFHVFKLFAANQNKPPE 60
           +LLG+ILLDRSN+ VM RYVSS+DNLRILMNLLRESSK+IQI+AFHVFKLFAANQNKPP+
Sbjct: 233 KLLGDILLDRSNSVVMTRYVSSRDNLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPPD 292

Query: 61  IVGILIANRSKLLRFLADFKMDREDEQFEEDKTLVIKEIASLK 103
           IV IL+AN+SKLLR  ADFK ++EDEQFE DK  V++EIA+L+
Sbjct: 293 IVSILVANKSKLLRLFADFKTEKEDEQFEADKAQVVREIAALE 335


>GSVIVT01030034001 assembled CDS
          Length = 342

 Score =  159 bits (403), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 75/107 (70%), Positives = 91/107 (85%)

Query: 1   QLLGEILLDRSNTAVMVRYVSSKDNLRILMNLLRESSKNIQIDAFHVFKLFAANQNKPPE 60
           +LLG++LLDRSN+AVM+RYVSS DN+RILMNLLRES+K IQ+++FHVFKLF ANQNKPPE
Sbjct: 232 KLLGDMLLDRSNSAVMIRYVSSLDNMRILMNLLRESNKAIQLESFHVFKLFVANQNKPPE 291

Query: 61  IVGILIANRSKLLRFLADFKMDREDEQFEEDKTLVIKEIASLKQAGD 107
           IV IL+ NRSKLLRF  DF +D+ED+QFE DK  VI+EI +L    D
Sbjct: 292 IVSILVTNRSKLLRFFGDFNIDKEDDQFEADKAQVIREITNLNPRAD 338


>GSVIVT01037761001 assembled CDS
          Length = 336

 Score =  154 bits (388), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 75/103 (72%), Positives = 89/103 (86%)

Query: 1   QLLGEILLDRSNTAVMVRYVSSKDNLRILMNLLRESSKNIQIDAFHVFKLFAANQNKPPE 60
           +LL EILLDRSN AVMVRYVSSKDN+RILMNLLRE SK IQI+AFHVFKLF AN+NKP +
Sbjct: 232 KLLAEILLDRSNCAVMVRYVSSKDNMRILMNLLREPSKTIQIEAFHVFKLFVANKNKPDD 291

Query: 61  IVGILIANRSKLLRFLADFKMDREDEQFEEDKTLVIKEIASLK 103
           I+ IL+ANR+KLL F ++FK+D E+E FEEDK  V+KEIA L+
Sbjct: 292 IINILVANRTKLLFFFSNFKIDGENEGFEEDKAHVVKEIAELQ 334


>GSVIVT01017860001 assembled CDS
          Length = 345

 Score = 80.5 bits (197), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 58/90 (64%), Gaps = 2/90 (2%)

Query: 1   QLLGEILLDRSNTAVMVRYVSSKDNLRILMNLLRESSKNIQIDAFHVFKLFAANQNKPPE 60
           +LL E LL+  N+ +M RY+     L+++M LL++SSKNIQI AFH+FK+F AN NKP E
Sbjct: 234 KLLSEFLLEPPNSHIMKRYILEVRYLKVMMTLLKDSSKNIQISAFHIFKIFVANPNKPRE 293

Query: 61  IVGILIANRSKLLRFLADFKMDR--EDEQF 88
           I  IL  N  +LL  L      +  +D+QF
Sbjct: 294 IKVILAKNHERLLALLQSLSGGKGADDDQF 323