Jatropha Genome Database

JcCA0018411.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0018411.10 - phase: 0 /partial
         (302 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01014066001 assembled CDS                                       539   e-154
GSVIVT01019299001 assembled CDS                                       226   8e-60
GSVIVT01017730001 assembled CDS                                        86   3e-17
GSVIVT01009654001 assembled CDS                                        74   9e-14
GSVIVT01005681001 assembled CDS                                        72   4e-13
GSVIVT01037302001 assembled CDS                                        70   8e-13
GSVIVT01000316001 assembled CDS                                        69   3e-12
GSVIVT01023957001 assembled CDS                                        66   2e-11

>GSVIVT01014066001 assembled CDS
          Length = 420

 Score =  539 bits (1389), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 268/302 (88%), Positives = 292/302 (96%)

Query: 1   IVGAENPVLMSAAEQIFGAGGKRMRPALVFLVSRATAEIAGLKELTTKHRRLAEIIEMIH 60
           IVGAENPVLMSAAEQIFGAGGKRMRPALVFLVSRATAEIAGLK+LT KHRRLAEIIEMIH
Sbjct: 119 IVGAENPVLMSAAEQIFGAGGKRMRPALVFLVSRATAEIAGLKDLTIKHRRLAEIIEMIH 178

Query: 61  TASLIHDDVLDESDMRRGKETVHQLYGTRVAVLAGDFMFAQSSWYLANLESIEVIKLISQ 120
           TASLIHDDVLDESDMRRGKETVHQLYGTRVAVLAGDFMFAQSSWYLANLE++EVIKLISQ
Sbjct: 179 TASLIHDDVLDESDMRRGKETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQ 238

Query: 121 VIKDFASGEIKQASSLFDCDVKLEEYLIKSYYKTASLIAASTKGAAIFSGVDSSISEQMY 180
           VIKDFASGEIKQASSLFDC+++LEEYL+KS+YKTASLIAASTKGAAIFSGVDS+I+EQMY
Sbjct: 239 VIKDFASGEIKQASSLFDCELELEEYLLKSFYKTASLIAASTKGAAIFSGVDSNIAEQMY 298

Query: 181 EYGKNLGLSFQVVDDVLDFTQSAEQLGKPAGSDLAKGNLTAPVIFALEKEPKLREIIESE 240
           EYG+NLGLSFQ+VDD+LDFTQSAEQLGKPAGSDLAKGNLTAPVIFALEKEPKLREI+ESE
Sbjct: 299 EYGRNLGLSFQIVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFALEKEPKLREIVESE 358

Query: 241 FCETGSLDKAVELVKHRGGIERAQELANEKAYLAIQSLNCLPRGAFRSALEEMVLYNLER 300
           FCE GSL++A++LVK  GGIE+AQ+LA +KA LAIQ+L CLP+ AFR ALE+MV YNLER
Sbjct: 359 FCEAGSLNEAIKLVKSCGGIEKAQDLAKQKADLAIQNLQCLPQSAFRLALEKMVKYNLER 418

Query: 301 ID 302
           ID
Sbjct: 419 ID 420


>GSVIVT01019299001 assembled CDS
          Length = 422

 Score =  226 bits (577), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 192/295 (65%), Gaps = 13/295 (4%)

Query: 1   IVGAENPVLMSAAEQIFGAG--GKRMRPALVFLVSRAT---------AEIAGL--KELTT 47
           +V AE P L SAAE  F  G  GKR RP ++ L++ A          AE+      EL T
Sbjct: 102 MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVPLPRPALAEVPETLSTELRT 161

Query: 48  KHRRLAEIIEMIHTASLIHDDVLDESDMRRGKETVHQLYGTRVAVLAGDFMFAQSSWYLA 107
           + + +AEI EMIH ASL+HDDVLD+++ RRG  +++ + G +VAVLAGDF+ +++   LA
Sbjct: 162 RQQCIAEITEMIHVASLLHDDVLDDAETRRGIGSLNIMMGNKVAVLAGDFLLSRACVALA 221

Query: 108 NLESIEVIKLISQVIKDFASGEIKQASSLFDCDVKLEEYLIKSYYKTASLIAASTKGAAI 167
           +L++ EV+ L++ V++   +GE  Q +S  +  V +E YL K+YYKTASLI+ S K  A+
Sbjct: 222 SLKNTEVVSLLATVVEHLVTGETMQMTSTSEQRVSMEYYLQKTYYKTASLISNSCKAIAL 281

Query: 168 FSGVDSSISEQMYEYGKNLGLSFQVVDDVLDFTQSAEQLGKPAGSDLAKGNLTAPVIFAL 227
            +G  + +S   +EYGKNLGL+FQ++DDVLDFT ++  LGK + SD+  G +TAP++FA+
Sbjct: 282 LAGQTAEVSMLAFEYGKNLGLAFQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAI 341

Query: 228 EKEPKLREIIESEFCETGSLDKAVELVKHRGGIERAQELANEKAYLAIQSLNCLP 282
           E+ P+L  +++        +D A++ +    GI+R +ELA + A LA ++++ LP
Sbjct: 342 EEFPQLDAVVKRGLDNPADIDLALDYLGKSRGIQRTRELAMKHANLAAEAIDSLP 396


>GSVIVT01017730001 assembled CDS
          Length = 254

 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 102/218 (46%), Gaps = 33/218 (15%)

Query: 20  GGKRMRPALVFLVSRATAEIAGLKELTTKHRRLAEIIEMIHTASLIHDDV--LDESDMRR 77
           GGKR+ P    +V  +  E+ G +E T      A  +EM+H  SL+ DD+  +D  D+RR
Sbjct: 35  GGKRIHP----IVCISACELVGGQESTAMPVVCA--VEMLHVVSLMQDDLPCMDNDDIRR 88

Query: 78  GKETVHQLYGTRVAVLAGDFMFAQSSWYLANLESIEVIKLISQVIKDFASGEIKQASSLF 137
           GK + H+ +G                         E+ + I    +   +G+    SS  
Sbjct: 89  GKPSNHKAFGES-----------------------ELARSIGS--QGLVAGQFLDLSSEG 123

Query: 138 DCDVKLEEYLIKSYYKTASLIAASTKGAAIFSGVDSSISEQMYEYGKNLGLSFQVVDDVL 197
             ++ LE        K   L+ AS    A+  G  S   E + ++G+ +GL +QVVDD+L
Sbjct: 124 SPEIGLEGLESIHINKAGPLLEASAVIGAMLGGGSSEQMEILRKFGRCVGLLYQVVDDIL 183

Query: 198 DFTQSAEQLGKPAGSDLAKGNLTAPVIFALEKEPKLRE 235
           D T+S ++LGK AG DL    +T P +  +EK  +  E
Sbjct: 184 DITKSTQELGKTAGKDLVADKVTYPKLVGIEKSREFAE 221


>GSVIVT01009654001 assembled CDS
          Length = 301

 Score = 73.9 bits (180), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 79/144 (54%), Gaps = 15/144 (10%)

Query: 56  IEMIHTASLIHDDV--LDESDMRRGKETVHQLYGTRVAVLAGDFMFAQSSWYLAN----L 109
           +EMIHT SLIHDD+  +D  D+RRGK T H+++G  VAVLAGD + A +  +LA     +
Sbjct: 121 VEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDSLLAFAFEHLATATSGV 180

Query: 110 ESIEVIKLISQVIKD-----FASGEIKQASSLFDCDVKLEEYLIKSYYKTASLIAASTKG 164
            S  ++  + ++ K        +G++   SS    DV L++      +KTA+L+ A+   
Sbjct: 181 SSSRIVAAVGELAKSIGAEGLVAGQVVDISSTGQSDVGLDQLEFIHIHKTAALLEAAVVL 240

Query: 165 AAIFSGVDSSISEQMYEYGKNLGL 188
            A+  G     S++   Y K +GL
Sbjct: 241 GALLGGG----SDEEATYPKLMGL 260


>GSVIVT01005681001 assembled CDS
          Length = 87

 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 49/69 (71%)

Query: 180 YEYGKNLGLSFQVVDDVLDFTQSAEQLGKPAGSDLAKGNLTAPVIFALEKEPKLREIIES 239
           +EY KNLGL+FQ++DDVLDFT ++  LGK + SD+  G +TAP++FA+E+ P+L  +++ 
Sbjct: 4   FEYAKNLGLAFQLIDDVLDFTGTSASLGKGSLSDIRNGIITAPILFAIEEFPQLDAVVKR 63

Query: 240 EFCETGSLD 248
                  +D
Sbjct: 64  GLDNPADID 72


>GSVIVT01037302001 assembled CDS
          Length = 86

 Score = 70.5 bits (171), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 47/59 (79%)

Query: 180 YEYGKNLGLSFQVVDDVLDFTQSAEQLGKPAGSDLAKGNLTAPVIFALEKEPKLREIIE 238
           +EY KNLGL+FQ++DDVLDFT ++  LGK + SD+  G +TAP++FA+E+ P+L  +++
Sbjct: 4   FEYAKNLGLAFQLIDDVLDFTGTSASLGKGSLSDIRNGIITAPILFAIEEFPQLDAVVK 62


>GSVIVT01000316001 assembled CDS
          Length = 87

 Score = 68.9 bits (167), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/75 (42%), Positives = 51/75 (68%)

Query: 180 YEYGKNLGLSFQVVDDVLDFTQSAEQLGKPAGSDLAKGNLTAPVIFALEKEPKLREIIES 239
           +EY KNLGL+FQ++D+VLDFT ++  LGK + SD+  G +TAP++FA+E+ P+L  +++ 
Sbjct: 4   FEYAKNLGLAFQLIDNVLDFTGTSASLGKGSLSDIRNGIITAPILFAIEEFPQLDAVVKR 63

Query: 240 EFCETGSLDKAVELV 254
                  +D   E V
Sbjct: 64  GLDNPADIDLVKENV 78


>GSVIVT01023957001 assembled CDS
          Length = 1187

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 15/188 (7%)

Query: 16  IFGAGGKRMRPALVFLVSRATAEIAGLKELTTKHRRLAEIIEMIHTASLIHDDV--LDES 73
           +   GGKR  P +      A  E+ G   L       A  +EM+H ASLIHDD+  +D+ 
Sbjct: 342 VLAKGGKRAPPVMCV----AVCELFGGDRLAAFPTACA--LEMVHAASLIHDDLPCMDDD 395

Query: 74  DMRRGKETVHQLYGTRVAVLAGDFMFAQSSWYLAN------LESIEVIKLISQVIKDFAS 127
             RRG+ + H +YG  +A+LAGD +F     ++ +      +   ++I++I+++ +   S
Sbjct: 396 PSRRGQPSNHTVYGVDMAILAGDALFPLGFRHIVSHTPSHLVPEGQLIRVIAEIARSVGS 455

Query: 128 GEIKQASSLFDCDVKLEEYLIKSYYKTASLIAASTKGAAIFSGVDSSISEQMYEYGKNLG 187
             +  A    D +            K   +   S        G       ++  YG+ +G
Sbjct: 456 TGMA-AGQFLDLEGAPNSVDFVQRKKFGEMAECSAVCGGFLGGAADDDILRLRRYGRAVG 514

Query: 188 LSFQVVDD 195
           + +QVVDD
Sbjct: 515 MLYQVVDD 522