Jatropha Genome Database

JcCA0015901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0015901.10 + phase: 2 /partial
         (586 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036252001 assembled CDS                                       307   1e-83
GSVIVT01000763001 assembled CDS                                       159   4e-39
GSVIVT01008097001 assembled CDS                                       110   2e-24
GSVIVT01011703001 assembled CDS                                        94   1e-19
GSVIVT01030780001 assembled CDS                                        92   7e-19
GSVIVT01021064001 assembled CDS                                        66   5e-11
GSVIVT01023657001 assembled CDS                                        52   7e-07
GSVIVT01022511001 assembled CDS                                        50   3e-06

>GSVIVT01036252001 assembled CDS
          Length = 604

 Score =  307 bits (786), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 199/409 (48%), Positives = 246/409 (60%), Gaps = 82/409 (20%)

Query: 153 SAVETPV----QGLRDSCIARTEEVWQAAVTDCEEMTRTESSTMAGTV--SETNPVSSDG 206
           ++VETPV    Q L D   A   EV Q +V +  E+++T S  + G V  SE NP+  D 
Sbjct: 169 NSVETPVELSKQVLDD---AEASEVPQTSVAEKGEISKTGSGPITGGVIGSEINPMLVDT 225

Query: 207 GPQVPNLLDLGEAYKLAVGSRGRQLSGVLAEQWIGKDSSRVSDDLKLLFSQLSAAR--EQ 264
             Q+PN LDLG+AY+LAV +RGRQ SG+LA+Q  GKDS++VS + K+L SQ+SA R  E 
Sbjct: 226 VHQMPNSLDLGDAYRLAVSNRGRQSSGILADQRTGKDSAKVSGEFKVLLSQMSATRGFEL 285

Query: 265 LTNDTSPRVTMSPRVSVSPKLSINSDELKNPDASSAIGMQILQKRISLERNESGLSLDGS 324
             ND SPRV            S N D+LK  D+S+  G+ ILQKRISLERNESGLSLDGS
Sbjct: 286 PLNDISPRV------------SGNVDDLKTFDSSTPTGLHILQKRISLERNESGLSLDGS 333

Query: 325 IVSEIEGETVVDRLNRQIEHDKKLLIALYKELEEERXXXXXXXXXXXXXXTRLQEEKATL 384
           IVSEIEGE++VDRL RQ+EHD+K +IALYKEL+EER              TRLQEEKA L
Sbjct: 334 IVSEIEGESMVDRLKRQVEHDRKTIIALYKELDEERNASAISANQAMAMITRLQEEKAAL 393

Query: 385 QMEALQCLRMMEEQAEYDMETLQKTNDLLAEREKEIQDLEADLEFYRNNYQSESLLQDTI 444
            MEALQ LRMMEEQ+EYDME LQKTNDLL E+EKE+QDLEA+LEFY              
Sbjct: 394 HMEALQYLRMMEEQSEYDMEALQKTNDLLTEKEKEMQDLEAELEFY-------------- 439

Query: 445 EQNDIKEEHPEASSVKISTKTRKSVTEKQDISYNVEGINMSAGDKSRDTLKNSLLDFEDE 504
                +++ P+                        E IN+           NSLL+ E+E
Sbjct: 440 -----RKKFPD------------------------ETINV-----------NSLLEIEEE 459

Query: 505 SSDILHCLKKLEKRLCLFSNNQL--DFANSEYSGNTEEKVNNFKGMNGK 551
              I  CLK LE +L LFSN+    + AN EYSGN    V++ K +N K
Sbjct: 460 RLYISECLKILEVKLRLFSNDGACSNLANGEYSGN---GVSDSKELNHK 505



 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 5   SDFIKPHDVTSISPTAVIAQGSEELHWQQADVKCNPSVLPDLISLSESPPSI-AKDMPVE 63
           S+ IK +   S +PTA I  G EEL WQ+ + K +PSVLP L    ++P S  + + PVE
Sbjct: 117 SNAIKLNGTASEAPTAAIGHGLEELDWQKLEHKVDPSVLPALTHTDDTPASFNSVETPVE 176

Query: 64  VSREKKDNS 72
           +S++  D++
Sbjct: 177 LSKQVLDDA 185


>GSVIVT01000763001 assembled CDS
          Length = 754

 Score =  159 bits (402), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 104/239 (43%), Positives = 131/239 (54%), Gaps = 38/239 (15%)

Query: 283 PKLSINSDELKNPDASSAIGMQILQKRISLERNESGL-SLDGSIVSEIEGETVVDRLNRQ 341
           P  S+   EL+   A  + G+Q LQK  SL R ESG+ SL GS   E+EGE   D L +Q
Sbjct: 372 PAPSMLDYELQIAYACGSNGIQKLQKSASLRRYESGMESLSGSTFGELEGENDYDPLKQQ 431

Query: 342 IEHDKKLLIALYKELEEERXXXXXXXXXXXXXXTRLQEEKATLQMEALQCLRMMEEQAEY 401
           +E+D++ +  L +ELEEER              TRLQEEKA L MEALQ LRMMEEQAEY
Sbjct: 432 VEYDQRCVRDLMRELEEERSASAVAANQTMAMITRLQEEKAALHMEALQYLRMMEEQAEY 491

Query: 402 DMETLQKTNDLLAEREKEIQDLEADLEFYRNNYQSESLLQDTIEQN-DIKEEHPEASSVK 460
           D+E L+K NDLLAEREK+IQDLEA+LEFYR  ++  S++ +  E+  D+K  +  A    
Sbjct: 492 DVEALEKANDLLAEREKDIQDLEAELEFYRKEFEDRSVMANMHEETCDLKRGNEPA---- 547

Query: 461 ISTKTRKSVTEKQDISYNVEGINMSAGDKSRDTLKNSLLDFEDESSDILHCLKKLEKRL 519
                                            LK   L+FEDE   I  CLKKLE +L
Sbjct: 548 --------------------------------ILKIPWLEFEDEKQYISECLKKLEMKL 574


>GSVIVT01008097001 assembled CDS
          Length = 600

 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/213 (38%), Positives = 114/213 (53%), Gaps = 11/213 (5%)

Query: 306 LQKRISLERNESGLS-LDGSIVSEIEGETVVDRLNRQIEHDKKLLIALYKELEEERXXXX 364
           L ++  LE+ E  L  L+G+  +E + ++ + RL RQ   D+K LIALY EL+EER    
Sbjct: 299 LPRKPVLEKAEFVLEPLEGNAANEADSDSTMQRLKRQARLDRKSLIALYMELDEERSASA 358

Query: 365 XXXXXXXXXXTRLQEEKATLQMEALQCLRMMEEQAEYDMETLQKTNDLLAEREKEIQDLE 424
                     TRLQ EKA++QMEALQ  RMMEEQAEYD E LQ   DLL +RE EI+ LE
Sbjct: 359 IAANNAMAMITRLQAEKASVQMEALQYQRMMEEQAEYDQEDLQAMRDLLGKREDEIKALE 418

Query: 425 ADLEFYRNNYQSESLLQDTIEQNDIKEEHPEASSVKISTKTRKSVTEKQDISYNVEGINM 484
           A+LE Y+   +S        E++       E SS        ++  E Q        +  
Sbjct: 419 AELEMYQPKNESSKKFTSLSEKS-------ECSSPAFCFNEVENNGEHQHKYDQTRSLQE 471

Query: 485 SAGDKSRDTLKNSLLDFEDESSDILHCLKKLEK 517
             G    +T++ S  DFE E S++L+ LK ++K
Sbjct: 472 ENGG---ETIEKSSGDFEGERSNLLNQLKNMKK 501


>GSVIVT01011703001 assembled CDS
          Length = 908

 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/131 (46%), Positives = 79/131 (60%), Gaps = 7/131 (5%)

Query: 290 DELKNPDASSAI-GMQILQKRISL-ERNESGL--SLDGSIVSEIEGETV---VDRLNRQI 342
           +E + PD  ++I G+  L KR+ L E+ ESG   SLDGS++SE EG  V   V++L   +
Sbjct: 516 EEERVPDTPTSIDGLNHLHKRLLLLEKRESGTEESLDGSVISEFEGGDVGLTVEKLKSAL 575

Query: 343 EHDKKLLIALYKELEEERXXXXXXXXXXXXXXTRLQEEKATLQMEALQCLRMMEEQAEYD 402
             ++K    LY ELEEER               RLQEEKA +QMEALQ  RMMEEQ+EYD
Sbjct: 576 RSERKASSVLYAELEEERSASAVAANQTMAMINRLQEEKAAMQMEALQYQRMMEEQSEYD 635

Query: 403 METLQKTNDLL 413
            E LQ  N+L+
Sbjct: 636 QEALQLLNELM 646


>GSVIVT01030780001 assembled CDS
          Length = 630

 Score = 92.0 bits (227), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 55/106 (51%), Positives = 70/106 (66%), Gaps = 5/106 (4%)

Query: 313 ERNESGL--SLDGSIVSEIEG-ETV--VDRLNRQIEHDKKLLIALYKELEEERXXXXXXX 367
           E+ ES +  S DGS++SE+EG +TV  ++RL   +E ++K L ALY ELEEER       
Sbjct: 270 EKKESVMENSFDGSVISEMEGSDTVFTIERLTAALEAERKALRALYAELEEERSASAIAA 329

Query: 368 XXXXXXXTRLQEEKATLQMEALQCLRMMEEQAEYDMETLQKTNDLL 413
                  TRLQEEKA +QMEALQ  RMMEEQ+EYD E LQ  N+L+
Sbjct: 330 NQTMAMITRLQEEKAAMQMEALQYQRMMEEQSEYDQEALQLLNELM 375


>GSVIVT01021064001 assembled CDS
          Length = 797

 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 68/131 (51%), Gaps = 8/131 (6%)

Query: 332 ETVVDRLNRQIEHDKKLLIALYKELEEERXXXXXXXXXXXXXXTRLQEEKATLQMEALQC 391
           E  V  L + +E +     ALY ELE+ER               R+QEEKA+++MEA Q 
Sbjct: 293 ENTVRVLEQALEEEHAARAALYHELEKERSAAASAADEAMAMILRIQEEKASIEMEARQF 352

Query: 392 LRMMEEQAEYDMETLQKTNDLLAEREKEIQDLEADLEFYRNNYQSESLLQDTIEQN---- 447
            R++EE++ YD E +    ++L  RE+E   LE ++E YR    SE+   D +E N    
Sbjct: 353 QRIIEEKSAYDAEEMNLLKEILLRREREKHFLEKEVEAYRQMMFSEN---DLLEGNTHDI 409

Query: 448 -DIKEEHPEAS 457
            D  E+ P +S
Sbjct: 410 VDTPEQRPISS 420


>GSVIVT01023657001 assembled CDS
          Length = 372

 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 52/100 (52%)

Query: 332 ETVVDRLNRQIEHDKKLLIALYKELEEERXXXXXXXXXXXXXXTRLQEEKATLQMEALQC 391
           ET +  L   +   ++LL  LY EL+EER               RLQ EKA ++MEA Q 
Sbjct: 12  ETDMTTLKEALWAQQQLLQKLYSELDEEREASATAASETLSMILRLQGEKAAVKMEASQY 71

Query: 392 LRMMEEQAEYDMETLQKTNDLLAEREKEIQDLEADLEFYR 431
            RM EE+  +  ++L    +L+ ++E EI  LE  ++ YR
Sbjct: 72  KRMAEERMCHAEKSLSLFEELIYQKEMEIASLEFQVQAYR 111


>GSVIVT01022511001 assembled CDS
          Length = 347

 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 39/64 (60%)

Query: 376 RLQEEKATLQMEALQCLRMMEEQAEYDMETLQKTNDLLAEREKEIQDLEADLEFYRNNYQ 435
           RLQ EKA +QMEA Q  R +EE+  +D + L    DLL +RE+ IQ L  +++ Y++   
Sbjct: 6   RLQREKAEIQMEARQFKRFVEEKMAHDQQELLALEDLLYKREQSIQALTCEVQAYKHRMM 65

Query: 436 SESL 439
           S  L
Sbjct: 66  SFGL 69