Jatropha Genome Database

JcCA0015401.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0015401.20 - phase: 0 /partial
         (258 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007712001 assembled CDS                                       325   9e-90
GSVIVT01015238001 assembled CDS                                       246   5e-66
GSVIVT01035357001 assembled CDS                                       244   4e-65
GSVIVT01016885001 assembled CDS                                       240   4e-64

>GSVIVT01007712001 assembled CDS
          Length = 503

 Score =  325 bits (834), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 160/247 (64%), Positives = 191/247 (77%), Gaps = 8/247 (3%)

Query: 12  VKEHKCKKVKETDADSVVYSESALLAEKSFSSELQKPSTVNGRHLEWTGDIVKNISPFQE 71
           VK+HK KKVKE + +  V+SE+ LLAE SF S   KPS  NG  LEWT + + N+SP Q+
Sbjct: 138 VKDHKPKKVKELNPNPFVHSENVLLAESSFVSGQDKPSVANGYALEWT-EKIDNMSPSQD 196

Query: 72  GHTKIAHAEDTTRASCRKVYAHAHDFXXXXXXXXXDGETFISADDLRINLWNLEISNQCF 131
            H K A+  +T  A CRKVYAHAHD+         DGETF+SADDLRINLWNLEIS+QCF
Sbjct: 197 THAKRANIGETVSARCRKVYAHAHDYNINSISNNSDGETFVSADDLRINLWNLEISDQCF 256

Query: 132 NIIDMKPANMEDLTEVITSAEFHPIYCNMLAYSSSRGFIRLVDMRQSALCDQSAMILQDA 191
           NIIDMKP+NMEDLTEVIT+AEFHPI+CN+LAYSSSRGFIRLVD+RQSA+CD +A ILQ  
Sbjct: 257 NIIDMKPSNMEDLTEVITAAEFHPIHCNLLAYSSSRGFIRLVDLRQSAICDHNARILQHG 316

Query: 192 DCHEPKSFFTEIIASISDMKFTNDGQHILSRDYLNLKVFDLNYTLWDMRKNALPVAIFKI 251
           +    KSFFTEI++SISD+KF +DG+H+LSRDY+NLK       LWD+R    PVAIFKI
Sbjct: 317 ESSGLKSFFTEIVSSISDIKFASDGRHLLSRDYMNLK-------LWDIRMETSPVAIFKI 369

Query: 252 HEHLQPK 258
           HEHL+PK
Sbjct: 370 HEHLRPK 376


>GSVIVT01015238001 assembled CDS
          Length = 508

 Score =  246 bits (629), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 131/255 (51%), Positives = 170/255 (66%), Gaps = 21/255 (8%)

Query: 12  VKEHKCKKVKETDADSVVYSESALLAEKSFSSELQKPSTVNGRHLEWT-GDIVKNISPFQ 70
           ++E K KK+ + + D      S      + +  + KP   NG   + + G + K+ S F 
Sbjct: 144 IQEKKVKKICDMNIDP-----SKATGNGNPACSIVKPYVTNGGCADRSYGYLSKDFS-FP 197

Query: 71  EGH------TKIAHAEDTT-RASCRKVYAHAHDFXXXXXXXXXDGETFISADDLRINLWN 123
            G         + H+ +T+  A CR++YAHAHD+         DGETFISADDLRINLWN
Sbjct: 198 AGSFAALHFPTVVHSNETSLSARCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWN 257

Query: 124 LEISNQCFNIIDMKPANMEDLTEVITSAEFHPIYCNMLAYSSSRGFIRLVDMRQSALCDQ 183
           LEISNQ FNI+D+KP NMEDLTEVITSAEFHP +CNMLAYSSS+G IRL+D+RQSALCD 
Sbjct: 258 LEISNQSFNIVDVKPTNMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDS 317

Query: 184 SAMILQDADCHEPKSFFTEIIASISDMKFTNDGQHILSRDYLNLKVFDLNYTLWDMRKNA 243
            A + +  +    KSFFTEIIASISD+KF  DG++ILSRDY+NLK       LWD+  ++
Sbjct: 318 HAKLFEGMEAPNSKSFFTEIIASISDIKFGKDGRYILSRDYMNLK-------LWDINMDS 370

Query: 244 LPVAIFKIHEHLQPK 258
            PVA F++HE+L+PK
Sbjct: 371 GPVATFQVHEYLRPK 385


>GSVIVT01035357001 assembled CDS
          Length = 496

 Score =  244 bits (622), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 113/184 (61%), Positives = 143/184 (77%), Gaps = 7/184 (3%)

Query: 75  KIAHAEDTTRASCRKVYAHAHDFXXXXXXXXXDGETFISADDLRINLWNLEISNQCFNII 134
           ++   E ++ A CR++YAHAHD+         DGETFISADDLRINLWNLEIS+Q FNI+
Sbjct: 196 RVMSHETSSVARCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISSQSFNIV 255

Query: 135 DMKPANMEDLTEVITSAEFHPIYCNMLAYSSSRGFIRLVDMRQSALCDQSAMILQDADCH 194
           D+KPANMEDLTEVITSAEFHP +CNMLAYSSS+G IRL+D+RQSALCD    + ++ +  
Sbjct: 256 DVKPANMEDLTEVITSAEFHPSHCNMLAYSSSKGSIRLIDLRQSALCDTHCKLFEELEAS 315

Query: 195 EPKSFFTEIIASISDMKFTNDGQHILSRDYLNLKVFDLNYTLWDMRKNALPVAIFKIHEH 254
             +SFFTEIIASISD+KF+ DG+H+LSRDY+ LK       LWD+   ++PVA F++HEH
Sbjct: 316 TSRSFFTEIIASISDIKFSKDGRHLLSRDYMTLK-------LWDINMESVPVATFQVHEH 368

Query: 255 LQPK 258
           L+PK
Sbjct: 369 LRPK 372


>GSVIVT01016885001 assembled CDS
          Length = 492

 Score =  240 bits (613), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 114/185 (61%), Positives = 142/185 (76%), Gaps = 7/185 (3%)

Query: 74  TKIAHAEDTTRASCRKVYAHAHDFXXXXXXXXXDGETFISADDLRINLWNLEISNQCFNI 133
           T ++  E +  A CR+VYAHAHD+         DGETFISADDLRINLWNLEISNQ FNI
Sbjct: 191 TVVSSPETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNI 250

Query: 134 IDMKPANMEDLTEVITSAEFHPIYCNMLAYSSSRGFIRLVDMRQSALCDQSAMILQDADC 193
           +D+KPANMEDLTEVITSAEFHP +CNMLAYSSS+G IRL D+RQSALCD  + + ++ + 
Sbjct: 251 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLNDLRQSALCDSHSKLFEEQEA 310

Query: 194 HEPKSFFTEIIASISDMKFTNDGQHILSRDYLNLKVFDLNYTLWDMRKNALPVAIFKIHE 253
              +SFFTEIIASISD+KF+ DG+ ILSRDY+ LK       LWD+  ++ PV+ F++HE
Sbjct: 311 PGSRSFFTEIIASISDIKFSKDGRFILSRDYMTLK-------LWDINMDSGPVSTFQVHE 363

Query: 254 HLQPK 258
           +L+PK
Sbjct: 364 YLRPK 368