Jatropha Genome Database

JcCA0015391.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0015391.10 + phase: 0 /pseudo
         (313 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018989001 assembled CDS                                       146   1e-35
GSVIVT01009691001 assembled CDS                                       138   3e-33
GSVIVT01015387001 assembled CDS                                        54   1e-07

>GSVIVT01018989001 assembled CDS
          Length = 298

 Score =  146 bits (369), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 122/306 (39%), Positives = 150/306 (49%), Gaps = 68/306 (22%)

Query: 1   MAEHFKVKFCRVITSFNSCRSKDPSTLPSNPVPSFXXXXXXXXXXXXXXXXHNSSIKRHM 60
           MA  FK++  RVI SF SCRSKDPS+LP NPVP                           
Sbjct: 1   MARRFKLRISRVIPSFQSCRSKDPSSLPENPVPV-------------------------- 34

Query: 61  SSALASIKSGFRSRSTANHFSETAYSKSATEFQWEKEEKWHVVAKMYDETPRRKIYNSLV 120
                         S+   FS+   S+S  EF+W+KE+KWHVVAK+YD+ PR+KIYNS V
Sbjct: 35  --------------SSRQCFSDDDDSESP-EFKWKKEDKWHVVAKVYDDNPRQKIYNSSV 79

Query: 121 KSDFDNHNILLPPHSNTEXXXXXXXXXXXSTPRIYVRNSSTESRLFSSEEEDDIYNKETE 180
             + D+ ++L PP   T            +  R+ +  SS +                  
Sbjct: 80  SGESDD-DVLPPPPPPTAEKKKRRSKKKKAAFRVRMSTSSADI----------------- 121

Query: 181 TLVSSTRSFSDYSSPDFSTHLQTISEVSHPFGINHRNKKVKKAKRHVTSKARKSCSEAAS 240
              SS+RSFS  SS +F+ HL+TI E+  P     R KK    K   TS      S   S
Sbjct: 122 ---SSSRSFSTDSSSEFNPHLETIREM--PMNGVRRKKKKNAKKVKKTS----GLSSPES 172

Query: 241 FSPARLSTFERLLPCTVDGKVKESFAVVKKSEDPYXXXXXXXXXXXXXXXXXXVKDLEQL 300
            SPARLS F+RL+PCTVDGKV+ESFAVVKKSEDPY                   KDLEQL
Sbjct: 173 ESPARLSMFQRLIPCTVDGKVRESFAVVKKSEDPYEDFKRSMMEMILEKQMFEEKDLEQL 232

Query: 301 LQCFLS 306
           L CFLS
Sbjct: 233 LHCFLS 238


>GSVIVT01009691001 assembled CDS
          Length = 324

 Score =  138 bits (348), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 111/327 (33%), Positives = 161/327 (49%), Gaps = 60/327 (18%)

Query: 1   MAEHFKVKFCRVITSFNSCRSKDPSTLPSNPVPSFXXXXXXXXXXXXXXXXHNSSIKRHM 60
           M + FK++F  +I S   CRS++ S LP +PVP+                          
Sbjct: 1   MGKGFKLRFS-LIHSLQFCRSRNRSALPESPVPA-------------------------- 33

Query: 61  SSALASIKSGFRSRSTANHFSETAYS--KSATEFQWEKEEKWHVVAKMYDETPRRKIYNS 118
           S  L+++             SET+Y     + E+ W+K+ KWHV++++Y++ PRRKI  S
Sbjct: 34  SHRLSTVN---------RKGSETSYDCDTESVEYSWKKDGKWHVISRVYEDGPRRKICYS 84

Query: 119 LVKSDFDNHNILLPPHSNTEXXXXXXXXXXXSTPRIYVRNSSTESRLFSSEEEDDIYNKE 178
               + D       P    +           + P +    SS +S  FSSE  D  Y++E
Sbjct: 85  PFPGESDGDLSPNQPQKMAKEKKVRKKKKKGTVPSVRTSTSSGDSGWFSSEGGD--YDEE 142

Query: 179 TETLVSSTRSFSDYSSPDFSTHLQTISEVSHPFGINHRN-----KKVKKAKRHVTSKAR- 232
           TETL+SS+RSFS+ SS +F+  L+TISE S    +  R+     KK ++ KRH++   R 
Sbjct: 143 TETLLSSSRSFSNDSSFEFNHPLETISEESKSV-VGKRDRMNNSKKARRLKRHISKNCRT 201

Query: 233 -------------KSCSEAASFSPARLSTFERLLPCTVDGKVKESFAVVKKSEDPYXXXX 279
                        K+ S   + SPAR+S ++  +PC +DGKV+ESFAVVKKS+DPY    
Sbjct: 202 GSSSSSSSGSGNPKTTSSPEAESPARVSVYQGRIPCRLDGKVRESFAVVKKSKDPYEDFK 261

Query: 280 XXXXXXXXXXXXXXVKDLEQLLQCFLS 306
                          KDLEQLLQCFLS
Sbjct: 262 KSMVEMIMEKQMFETKDLEQLLQCFLS 288


>GSVIVT01015387001 assembled CDS
          Length = 807

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/50 (52%), Positives = 30/50 (60%)

Query: 257 VDGKVKESFAVVKKSEDPYXXXXXXXXXXXXXXXXXXVKDLEQLLQCFLS 306
           ++GKVK+SFAVVK+S DPY                   KDLEQLLQCFLS
Sbjct: 727 LEGKVKDSFAVVKRSSDPYSDFRTSMVEMIVEKQIFAAKDLEQLLQCFLS 776