Jatropha Genome Database

JcCA0013701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0013701.10 + phase: 0 /pseudo/partial
         (274 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01026435001 assembled CDS                                       107   4e-24
GSVIVT01013439001 assembled CDS                                        88   4e-18
GSVIVT01008772001 assembled CDS                                        51   6e-07

>GSVIVT01026435001 assembled CDS
          Length = 288

 Score =  107 bits (268), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 50/64 (78%), Positives = 53/64 (82%)

Query: 1   VTSYKLWRQVGESFNPPKTCTTVSWTFRNFYEKALLEYEKHKVRCGELPFPDGSLTEPVR 60
           VTS KLWRQVGESF PPKTCTTVSWTFR FYEKALL+YE+HK R GEL  P  SL EP+ 
Sbjct: 43  VTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTRGGELSVPVSSLAEPMN 102

Query: 61  VENQ 64
           VENQ
Sbjct: 103 VENQ 106


>GSVIVT01013439001 assembled CDS
          Length = 449

 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 39/48 (81%), Positives = 43/48 (89%)

Query: 1   VTSYKLWRQVGESFNPPKTCTTVSWTFRNFYEKALLEYEKHKVRCGEL 48
           VT+ KLWRQVG+SF+PPKTCTTVSWTFR FYEKALLEYE+HK   GEL
Sbjct: 202 VTASKLWRQVGDSFHPPKTCTTVSWTFRIFYEKALLEYERHKRNRGEL 249


>GSVIVT01008772001 assembled CDS
          Length = 179

 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 23/28 (82%), Positives = 23/28 (82%)

Query: 1  VTSYKLWRQVGESFNPPKTCTTVSWTFR 28
          VTS KLWRQVGESF  PKTCTTVSW  R
Sbjct: 35 VTSCKLWRQVGESFKSPKTCTTVSWHGR 62