Jatropha Genome Database

JcCA0012252.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0012252.10 + phase: 2 /partial
         (270 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000712001 assembled CDS                                       466   e-132
GSVIVT01000713001 assembled CDS                                       390   e-109
GSVIVT01001835001 assembled CDS                                        66   2e-11
GSVIVT01021322001 assembled CDS                                        64   1e-10
GSVIVT01008492001 assembled CDS                                        62   3e-10
GSVIVT01016315001 assembled CDS                                        52   4e-07
GSVIVT01029855001 assembled CDS                                        51   4e-07
GSVIVT01024528001 assembled CDS                                        50   1e-06
GSVIVT01020670001 assembled CDS                                        50   2e-06
GSVIVT01014233001 assembled CDS                                        49   3e-06

>GSVIVT01000712001 assembled CDS
          Length = 416

 Score =  466 bits (1199), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 228/325 (70%), Positives = 250/325 (76%), Gaps = 55/325 (16%)

Query: 1   QKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTK 60
           QKFGEIAFCAITADEQVKGYGTRLMNHLKQ+ARD+DGLTHFLTYADNNAVGYFIKQGFTK
Sbjct: 91  QKFGEIAFCAITADEQVKGYGTRLMNHLKQYARDIDGLTHFLTYADNNAVGYFIKQGFTK 150

Query: 61  EIYLDKDRWQGYIKDYDGGILMECKIDPKLPYTDLSTMIRRQRQAIDEKIRELSNCHIVY 120
           EI L+KDRWQGYIKDYDGGILMECKIDPKLPYTDLSTMIRRQRQAIDEKIR+LSNCHIVY
Sbjct: 151 EISLEKDRWQGYIKDYDGGILMECKIDPKLPYTDLSTMIRRQRQAIDEKIRQLSNCHIVY 210

Query: 121 PGIDFQKKEVGIPKKIIKVEDIPGLREAGWTPDQWGYSRFNAFNTSTDSATNQKHWTAFM 180
            GIDFQK EVGIP++IIKVE+IPGL+EAGWTPDQ+G+SRF   + S D A+N+K  TAFM
Sbjct: 211 TGIDFQKNEVGIPRRIIKVEEIPGLKEAGWTPDQYGHSRFRTTSASADRASNRKSLTAFM 270

Query: 181 RSLLKS-----------------------------------------MHDHADAWPFKEP 199
           RSLLK+                                         MHDH DAWPFKEP
Sbjct: 271 RSLLKNFLLFVLQGLFYNVSRLCLFIMTEVCDLTDLCLTSKELLVSLMHDHPDAWPFKEP 330

Query: 200 VDARDVPDYYDIIKDPMDLKTMSKRVESEQYYVTFDMFVADVKRMFANART--------- 250
           VDARDVPDYYDIIKDPMDLKTMSKRVESEQYY+T +MF+ DV+ MF NART         
Sbjct: 331 VDARDVPDYYDIIKDPMDLKTMSKRVESEQYYITLEMFLTDVRTMFKNARTYNSPDTIYY 390

Query: 251 -----LEAHFESKVQSGFQSAAKIQ 270
                LE+ F  KVQ+G QS++KIQ
Sbjct: 391 KCATRLESFFSGKVQAGLQSSSKIQ 415


>GSVIVT01000713001 assembled CDS
          Length = 438

 Score =  390 bits (1001), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 187/284 (65%), Positives = 226/284 (79%), Gaps = 16/284 (5%)

Query: 1   QKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTK 60
           Q+F EIAF AI ADEQ+KG G RLMNHLKQHAR++DG+TH LT ADNNAV YFIKQGF K
Sbjct: 153 QQFVEIAFGAIMADEQIKGCGARLMNHLKQHARNMDGVTHLLTCADNNAVDYFIKQGF-K 211

Query: 61  EIYLDKDRWQGYIKDYDGGILMECKIDPKLPYTDLSTMIRRQRQAIDEKIRELSNCHIVY 120
           +I L+K+RWQGYIK YDGGILMEC++ PK PY+ L+TMI  QRQAI+E+IRE+SNC IVY
Sbjct: 212 KITLEKERWQGYIKAYDGGILMECELHPKFPYSYLTTMISHQRQAINERIREVSNCEIVY 271

Query: 121 PGIDFQKKEVGIPKKIIKVEDIPGLREAGWTPDQWGYSRFNAFNTSTDSATNQKHWTAFM 180
           PGIDFQK + G+P + IK+EDIPGL++AGWTPDQ+G+SRF   N S D+ +N++  T FM
Sbjct: 272 PGIDFQKGDDGVPARPIKLEDIPGLKDAGWTPDQYGHSRFKTSNASADTVSNREPLTTFM 331

Query: 181 RSLLKSMHDHADAWPFKEPVDARDVPDYYDIIKDPMDLKTMSKRVESEQYYVTFDMFVAD 240
           RSLLK ++DH DAWPFKEPVD+ + P YYDIIKDPMDLKT+SKR+ESEQYY+T +MF+AD
Sbjct: 332 RSLLKQIYDHPDAWPFKEPVDSDNAPGYYDIIKDPMDLKTISKRIESEQYYITLEMFLAD 391

Query: 241 VKRMFANART--------------LEAHFESKVQSGFQSAAKIQ 270
           V+RMFANART              LE+ F  K QS  Q  +KIQ
Sbjct: 392 VRRMFANARTYNSPHTIYYKCATRLESFFSVKFQSSLQ-YSKIQ 434


>GSVIVT01001835001 assembled CDS
          Length = 714

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 6/101 (5%)

Query: 155 WGYSRFNAFNTSTDSATNQKHWTAFMR---SLLKSMHDHADAWPFKEPVD--ARDVPDYY 209
           W       F ++T ++         M+   +LLK +  H   W F EPVD    ++PDY+
Sbjct: 127 WNRGTSGRFESATQASAPSTASVLLMKQCETLLKQLMSHQHGWVFNEPVDIVKLNIPDYF 186

Query: 210 DIIKDPMDLKTMSKRVESEQYYVTFDMFVADVKRMFANART 250
            IIK PMDL T+  ++ S  Y    D F ADV+  F+NA+T
Sbjct: 187 TIIKHPMDLGTIKGKIASGAYSSPLD-FAADVRLTFSNAQT 226


>GSVIVT01021322001 assembled CDS
          Length = 573

 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 3/69 (4%)

Query: 182 SLLKSMHDHADAWPFKEPVD--ARDVPDYYDIIKDPMDLKTMSKRVESEQYYVTFDMFVA 239
           S+LK +  H   W F +PVD  A ++PDY+ II  PMDL T+  ++E   Y  T + F A
Sbjct: 61  SILKKLMTHPAGWVFNQPVDPVALNIPDYFSIISKPMDLGTIKSKLEKNMYLAT-EEFAA 119

Query: 240 DVKRMFANA 248
           DV+  FANA
Sbjct: 120 DVRLTFANA 128


>GSVIVT01008492001 assembled CDS
          Length = 700

 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 3/94 (3%)

Query: 159 RFNAFNTSTDSATNQKHWTAFMRSLLKSMHDHADAWPFKEPVDARD--VPDYYDIIKDPM 216
           RF +   +    T+         +LL  +  H   W F  PVD  +  +PDY+ +IK PM
Sbjct: 143 RFESVKQAAPPGTSNSMLMKQCETLLSRLMTHQFGWIFNNPVDVVELKIPDYFTVIKHPM 202

Query: 217 DLKTMSKRVESEQYYVTFDMFVADVKRMFANART 250
           DL T+  ++ S +Y   FD F ADV+  F+NA T
Sbjct: 203 DLGTIKSKMASGEYLSPFD-FAADVRLTFSNAMT 235


>GSVIVT01016315001 assembled CDS
          Length = 362

 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 11/97 (11%)

Query: 163 FNTSTDS----ATNQKHWTAFMR---SLLKSMHDHADAWPFKEPVDARDVP--DYYDIIK 213
            N S D+    A   K     MR   ++L+ +  H  AWPF +PVD   +   DYY++I+
Sbjct: 59  LNVSKDASRREAAAAKRMQELMRQFGTILRQITQHKWAWPFMQPVDVEGLGLHDYYEVIE 118

Query: 214 DPMDLKTMSKRVESE--QYYVTFDMFVADVKRMFANA 248
            PMD  T+  ++E++    Y       ADV+ +F NA
Sbjct: 119 KPMDFSTIKNKMEAKDGAGYKNVREICADVRLVFKNA 155


>GSVIVT01029855001 assembled CDS
          Length = 593

 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 40/75 (53%), Gaps = 5/75 (6%)

Query: 196 FKEPVDARDVPDYYDIIKDPMDLKTMSKRVESEQYYVTFDMFVADVKRMFANARTLEAHF 255
           F EPVD  +V DYY+IIK+PMD  TM  ++  E  Y   + F  DV  + +NA     HF
Sbjct: 46  FAEPVDPEEVEDYYEIIKEPMDFGTMRAKLH-EGMYKNLEQFEHDVFLISSNA----MHF 100

Query: 256 ESKVQSGFQSAAKIQ 270
            S     F+ A  +Q
Sbjct: 101 NSSATIYFRQARALQ 115


>GSVIVT01024528001 assembled CDS
          Length = 254

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 196 FKEPVDARDVPDYYDIIKDPMDLKTMSKRVESEQYYVTFDMFVADVKRMFANA 248
           F EPVDA +V  YYD+IK+PMD  TM  +++ E  Y T + F  DV ++ +NA
Sbjct: 50  FAEPVDADEVEGYYDVIKEPMDFGTMRAKLQ-EGMYKTLEQFEHDVFQISSNA 101


>GSVIVT01020670001 assembled CDS
          Length = 612

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 3/71 (4%)

Query: 182 SLLKSMHDHADAWPFKEPVDARDVP--DYYDIIKDPMDLKTMSKRVESEQYYVTFDMFVA 239
           +LL+ +  H   W F  PVD + +   DY+ II DPMDL T+  R+ ++ +Y +   F  
Sbjct: 292 ALLERLMKHKHGWVFNSPVDVKGLGLHDYFSIITDPMDLGTVKSRL-NKNWYKSPREFAE 350

Query: 240 DVKRMFANART 250
           DV+  F NA T
Sbjct: 351 DVRLTFHNAMT 361


>GSVIVT01014233001 assembled CDS
          Length = 467

 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 182 SLLKSMHDHADAWPFKEPVDARDVP--DYYDIIKDPMDLKTMSKRVESEQYYVTFDMFVA 239
           +LL  +  H   W F  PVD + +   DYY IIK PMD  T+  R+ S+ +Y +   F  
Sbjct: 131 NLLAKLMKHKHGWVFNNPVDVKGLGLHDYYSIIKHPMDFGTVKSRL-SKNWYKSPREFAE 189

Query: 240 DVKRMFANART 250
           DV+    NA T
Sbjct: 190 DVRLTLQNAMT 200