Jatropha Genome Database

JcCA0012121.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0012121.20 - phase: 0 /partial
         (177 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022112001 assembled CDS                                       339   4e-94

>GSVIVT01022112001 assembled CDS
          Length = 524

 Score =  339 bits (869), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 159/177 (89%), Positives = 169/177 (95%)

Query: 1   GHEVDAFGVGTNLVTCFAQAALGCVFKLVEINNQPRIKLSEDVSKVSIPCKKRSYRLYGK 60
           GHEVDAFG+GT LVTC+AQAALGCVFKLVEINNQPRIKLSEDVSKVSIPCKKR YRL+G+
Sbjct: 348 GHEVDAFGIGTYLVTCYAQAALGCVFKLVEINNQPRIKLSEDVSKVSIPCKKRCYRLFGR 407

Query: 61  EGYPLVDIMTGENEPSPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSLGKAREE 120
           EGYPLVDIMTGENE  PK+ ERILCRHPF+ESKRAYVVPQ VEELLKCYW GS GKAREE
Sbjct: 408 EGYPLVDIMTGENELPPKLAERILCRHPFSESKRAYVVPQHVEELLKCYWSGSSGKAREE 467

Query: 121 LPPLKDIRDRCIKQLEQMRPDHMRRLNPTPYKVSVSAKLYDFIHFLWLNEAPVGELQ 177
           LPPLK+I++RC+KQLEQMRPDHMRRLNPTPYKVSVSAKLYDFIHFLWLNEAPVGELQ
Sbjct: 468 LPPLKNIKERCMKQLEQMRPDHMRRLNPTPYKVSVSAKLYDFIHFLWLNEAPVGELQ 524