Jatropha Genome Database

JcCA0012121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0012121.10 + phase: 0 /pseudo/partial
         (736 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022113001 assembled CDS                                       923   0.0  
GSVIVT01026455001 assembled CDS                                       152   6e-37
GSVIVT01000087001 assembled CDS                                        89   9e-18

>GSVIVT01022113001 assembled CDS
          Length = 1561

 Score =  923 bits (2385), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/571 (78%), Positives = 495/571 (86%), Gaps = 4/571 (0%)

Query: 166  VLPELLKNLVERRRMVKSWMKNASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKP 225
             L  LLK LVERR+ VKS +K ASGLK+QQLDIQQQALKLTANSMYGCLGFSNSRFYAKP
Sbjct: 995  TLHTLLKKLVERRKTVKSRLKTASGLKVQQLDIQQQALKLTANSMYGCLGFSNSRFYAKP 1054

Query: 226  LAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDITKAKAIAGKVIQEVN 285
            LAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIY+GLDDITKAKAIAGKVIQEVN
Sbjct: 1055 LAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYTGLDDITKAKAIAGKVIQEVN 1114

Query: 286  KKYRCLEIDLDGXXXXXXXXXXXXXXXXXXQFKDGTPYEVIERKGLDMVRRDWSLLSKEL 345
            KKYRCLEIDLDG                  QFKDGTPYEVIERKGLDMVRRDWSLLSKEL
Sbjct: 1115 KKYRCLEIDLDGLYKRMLLLKKKKYAAVKLQFKDGTPYEVIERKGLDMVRRDWSLLSKEL 1174

Query: 346  GDFCLAQILSGGSCEDVVESIHNSLMKVQEDMRNGQVELEKYVITKSLTKPPEAYPDAKN 405
            GDF L+QILSGGSCEDVVESIHNSLMKVQEDMRNG+V LEKY+ITKSLTKPPEAYPD KN
Sbjct: 1175 GDFSLSQILSGGSCEDVVESIHNSLMKVQEDMRNGEVALEKYIITKSLTKPPEAYPD-KN 1233

Query: 406  QPHVLVALRLKQMGYTTGCSAGDTVPYIICSEQEASSGSMTGIAQRARHPDELKKDDGKW 465
            QPHV VALRLKQ GY+TGCSAGDTVPYIIC EQ  SSGS TGIAQRARHPDELK+D+GKW
Sbjct: 1234 QPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSTGIAQRARHPDELKRDNGKW 1293

Query: 466  MIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFKNKXXXXXXXXXXXXLLF 525
            MIDIDYYL+QQIHPVVSRLCASIQGTSP RLADCLGLDSSKF+++            LL 
Sbjct: 1294 MIDIDYYLAQQIHPVVSRLCASIQGTSPARLADCLGLDSSKFQSRRSEAINNDFSISLLS 1353

Query: 526  AVNDEERYRSCEPLILSCPSCSNTFECPAIFSSIGLIIGEKPIKPRVKESMSNFWRTMRC 585
            A  DEERYR CE LILSCPSC  TF+CP +F+S+   I EK  + +V+ES +NFW+ +RC
Sbjct: 1354 A--DEERYRGCEHLILSCPSCFGTFDCPTLFNSVHTSITEKSTQVQVEES-NNFWQRLRC 1410

Query: 586  PRCPEEGDMGIISSAIIANQVKRQVEGFLSVYYKGLMMCDDETCKYTTRSLNLRLVGDAE 645
            P+CPEEGD+G +S A+IANQVKRQ +GF+S+YYKG MMCDDETCK+TT SLNLR++GD+E
Sbjct: 1411 PKCPEEGDVGRMSPALIANQVKRQADGFISMYYKGSMMCDDETCKHTTNSLNLRVIGDSE 1470

Query: 646  KGTVCANYPRCNGRLVRKYKEADLYKQLSYFCYLLDTVYCIEKMDANTRIPLEKELSKIR 705
            +GTVC NYPRCNGRLVRKY EADLYKQLSYFC++LDTV CIEKM+ +TRIP+EKEL++IR
Sbjct: 1471 RGTVCPNYPRCNGRLVRKYTEADLYKQLSYFCHVLDTVRCIEKMEVSTRIPIEKELARIR 1530

Query: 706  PIVDLALSTVKKIRDRCAYGWVQLNDLAVTV 736
            P+V+LA ST +KIRDRCAYGWVQL+DL VTV
Sbjct: 1531 PLVNLAASTTQKIRDRCAYGWVQLDDLTVTV 1561



 Score =  138 bits (348), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 79/148 (53%), Positives = 85/148 (57%), Gaps = 53/148 (35%)

Query: 28  SFQGARAQRVEYLLLHAFHAKKYIVPDKNSSYVKETKMTKRRINHGGEERNAEELXXXXX 87
           + QGARAQRVEYLLLH FHAK               KM +                    
Sbjct: 813 TLQGARAQRVEYLLLHEFHAK---------------KMNQ-------------------- 837

Query: 88  XXXXXXXXXXRXXXXXXPAYAGGLVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTTV 147
                             AY+GGLVLEPK+GLYDKY+LLLDFNSLYPSIIQEYNICFTTV
Sbjct: 838 ------------------AYSGGLVLEPKRGLYDKYILLLDFNSLYPSIIQEYNICFTTV 879

Query: 148 EKSTDGLVPRLPSGKKTGVLPELLKNLV 175
           E+S DG VPRLPS K TGVLPE L  LV
Sbjct: 880 ERSPDGSVPRLPSSKTTGVLPESLALLV 907


>GSVIVT01026455001 assembled CDS
          Length = 1089

 Score =  152 bits (384), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 121/415 (29%), Positives = 194/415 (46%), Gaps = 38/415 (9%)

Query: 106 AYAGGLVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTTVEKSTD----GLVP----R 157
            Y G  VLE   G Y+K +  LDF SLYPSI+  YN+C+ T+    D     L P    +
Sbjct: 570 TYEGATVLEANAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDVRKLNLPPECVNK 629

Query: 158 LPSGK-------KTGVLPELLKNLVERRRMVKSWMKNASG-LKIQQLDIQQQALKLTANS 209
            PSG+       + G+LPE+L+ L+  R+  K+ +K A   L+   LD +Q ALK++ANS
Sbjct: 630 TPSGEIFVKSSLQKGILPEILEELLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANS 689

Query: 210 MYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNNL--------NLEVIYGDTDSI 261
           +YG  G +  +     ++  +T  GR++++ T  LV+           N EVIYGDTDS+
Sbjct: 690 VYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEEKFTTLGGYEHNAEVIYGDTDSV 749

Query: 262 MIYSGLDDITKAKAIAGKVIQEVNKKYRCLEIDLDGXXXXXXXXXXXXXXXXXXQFKDGT 321
           M+  G+  +  A  +  +  + ++  +    I L+                    + +  
Sbjct: 750 MVLFGVSTVEAAMNLGREAAEYISGTF-MKPIKLEFEKVYYPYLLISKKRYAGLLWTNPD 808

Query: 322 PYEVIERKGLDMVRRDWSLLSKELGDFCLAQILSGGSCEDVVESIHNSLMKVQEDMRNGQ 381
            ++ ++ KG++ VRRD  LL K L   CL +IL        V+ + N++     D+   +
Sbjct: 809 KFDKMDTKGIETVRRDNCLLVKNLVKECLHKILIDRDIPGAVQYVKNTIA----DLLMNR 864

Query: 382 VELEKYVITKSLTKPPEAYPDAKNQPHVLVALRLKQMGYTTGCSAGDTVPYIICSEQEAS 441
           ++L   VITK LTK  + Y       HV +A R+++    T  + GD VPY+I       
Sbjct: 865 MDLSLLVITKGLTKTGDDY--EVKAAHVELAERMRKRDAATAPNVGDRVPYVIIK----- 917

Query: 442 SGSMTGIAQRARHPDELKKDDGKWMIDIDYYLSQQIHPVVSRLCASIQGTSPERL 496
             +  G     R  D +   +    ID  YYL  QI   + R+   I   + + L
Sbjct: 918 --AAKGAKAYERSEDPIYVLENNIPIDPQYYLENQISKPLLRIFEPILKNASKEL 970


>GSVIVT01000087001 assembled CDS
          Length = 1732

 Score = 88.6 bits (218), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 102/417 (24%), Positives = 174/417 (41%), Gaps = 59/417 (14%)

Query: 111  LVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTT----VEKS---------------- 150
            LV+EP+ G Y   V++LDF SLYPS+I  YN+C++T    V  S                
Sbjct: 1184 LVMEPESGFYADPVVVLDFQSLYPSMIIAYNLCYSTCLGKVAPSKADVLGVSIYSPDPHA 1243

Query: 151  ----------TDGLVPRLPSGKKTGVLPELLKNLVERRRMVKSWMKN--ASGLKIQQL-D 197
                      T   V  +PS  + GVLP LL+ ++  R MVK  MK    S   +Q++ +
Sbjct: 1244 LHDLKDQILLTPNGVMYVPSKARKGVLPRLLEEILSTRIMVKKAMKKLVPSQQVLQRIFN 1303

Query: 198  IQQQALKLTANSMYG--CLGFSNSRFYAKPLAELITLQGREILQSTVDLV--QNNLNLEV 253
             +Q ALKL AN  YG    G+S  R     LA+ I   GR  L++ + LV   +    +V
Sbjct: 1304 ARQLALKLIANVTYGYTAAGYSG-RMPCAELADSIVQCGRRTLENAISLVNTHDKWKAKV 1362

Query: 254  IYGDTDSIMIYSGLDDITKAKAIAGKVIQEVNK-KYRCLEIDLDGXXXXXXXXXXXXXXX 312
            IYGDTDS+ +      + ++  I  ++   V       + + ++                
Sbjct: 1363 IYGDTDSMFVLLKGRTVKESFQIGHEIASAVTAMNPNPVTLKMEKVYHPCFLLTKKRYVG 1422

Query: 313  XXXQFKDGTPYEVIERKGLDMVRRD-----WSLLSKELGDFCLAQILSGGSCEDVVESIH 367
               +  D       + KG++ VRRD        + + L  F   Q +S          + 
Sbjct: 1423 YSYESPDQIE-PTFDAKGIETVRRDTCGAVAKTMEQSLRLFFEHQDIS---------KVK 1472

Query: 368  NSLMKVQEDMRNGQVELEKYVITKSLTKPPEAYPDAKNQPHVLVALRLKQMGYTTGCSAG 427
              L +    + +G+V L+ +V  K +     +   +   P  +VA++  +          
Sbjct: 1473 VYLQRQWRRILSGRVSLQDFVFAKEVRLGTYSSRASSLPPAAIVAIKAMRADPRAEPCYA 1532

Query: 428  DTVPYIICSEQEASSGSMTGIAQRARHPDELKKDDGKWMIDIDYYLSQQIHPVVSRL 484
            + VPY++   +  +      +      P +L   D  + ++  YY+++QI P + R+
Sbjct: 1533 ERVPYVVIHGEPGAR-----LVDLVVDPLDLLAIDSPYRLNDQYYINKQIIPALQRV 1584