Jatropha Genome Database

JcCA0012011.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0012011.20 + phase: 0 /TE/partial
         (1424 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028612001 assembled CDS                                       133   6e-31
GSVIVT01014104001 assembled CDS                                       120   7e-27
GSVIVT01024357001 assembled CDS                                       114   5e-25
GSVIVT01034745001 assembled CDS                                       101   3e-21
GSVIVT01017026001 assembled CDS                                        92   2e-18
GSVIVT01037631001 assembled CDS                                        64   5e-10
GSVIVT01011363001 assembled CDS                                        61   4e-09
GSVIVT01015124001 assembled CDS                                        60   7e-09

>GSVIVT01028612001 assembled CDS
          Length = 3048

 Score =  133 bits (335), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 73/178 (41%), Positives = 104/178 (58%), Gaps = 5/178 (2%)

Query: 781 FARKIQNEKGYNISTIRSDHRGEFENQKFNAFCNELGIFYNFSAPRTPQQNGVVECKNRT 840
           F   ++ E    +  +R+D  GEF +Q+F  FC+  GI    +A  TPQQNGV E KNRT
Sbjct: 564 FKTYVEKETSSFLRCLRTDRGGEFTSQEFAIFCDVHGIRRQLTAAYTPQQNGVAERKNRT 623

Query: 841 LQEMVRTMLSDSKLPKNFXAEAVNTACYILNRALVRSKLKKTPYELYKGRKPNIGYFHIF 900
           +  MVR+MLS  KLPK F  EAVN   ++LNR+   +   KTP E +   KP++ YF +F
Sbjct: 624 IMNMVRSMLSAKKLPKTFWPEAVNWTVHVLNRSPTFAVQNKTPEEAWGKLKPSVDYFRVF 683

Query: 901 GC--KCFILDNKKNHLAKFDAKSYEGIFLGYSSNSKAYKVFNKKTLAVEESIHVVFDE 956
           GC     + D+K+    K D KS+  + LG S  SKAY++++  +  +  S  VVF+E
Sbjct: 684 GCLSHVHVPDSKR---TKLDDKSFSCVLLGVSEESKAYRLYDPISQKIIISRDVVFEE 738



 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 76/142 (53%), Gaps = 7/142 (4%)

Query: 65  NAKAINILRCALDATEYNKVSGCRSATEVXKKLRVTYEGTYRVKESRINILWREYKMFSM 124
           + KA N L  ALD +    +   ++  ++   ++  ++GT RVK   +  L +E+K+  M
Sbjct: 91  DLKAKNYLFQALDRSILETILNKKTTKDIWDSMKQKFQGTTRVKRGNLQALRKEFKILHM 150

Query: 125 KEGETITELNSRFTNIVNPLRTLGKEISEDELVKKILRILPKKWDSIGTVMNYKETPVTY 184
           K GET+ E  SR   I N ++  G++     +V+KILR +  K+D +  V + +E+    
Sbjct: 151 KSGETVNEYFSRTLAIANKMKVNGEDKGNTAVVEKILRSMTSKFDYV--VCSIEESKD-- 206

Query: 185 DYLIGALVSEEMKSSLTVEDKK 206
              +  L  +E++SSL V +++
Sbjct: 207 ---LDTLTIDELQSSLLVHEQR 225


>GSVIVT01014104001 assembled CDS
          Length = 1354

 Score =  120 bits (300), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 70/199 (35%), Positives = 107/199 (53%), Gaps = 19/199 (9%)

Query: 780  IFARKIQNEKGYNISTIRSDHRGEFENQ---------KFNAFCNELGIFYNFSAPRTPQQ 830
            +F  +++ +    I  +RSD  GE+  +          F  F  + GI   ++ P TPQQ
Sbjct: 912  MFITEVERQLDKKIKIVRSDQGGEYYGRYDESGQNPGPFAKFLEKHGIRAQYTMPGTPQQ 971

Query: 831  NGVVECKNRTLQEMVRTMLSDSKLPKNFXAEAVNTACYILNRALVRSKLKKTPYELYKGR 890
            NGV E +NRTL EMVR+M+S S +P +   EA+ TA YILNR   ++ + KTP+EL+ GR
Sbjct: 972  NGVAERRNRTLMEMVRSMMSYSSVPISLWGEALKTAMYILNRVPSKA-VPKTPFELWTGR 1030

Query: 891  KPNIGYFHIFGCKCFILDNKKNHLAKFDAKSYEGIFLGYSSNSKAYKVFNKKTLAVEESI 950
            KP++ + HI+GC          H  K D+++  G F+GY   SK Y+ +         S+
Sbjct: 1031 KPSLRHIHIWGCPAEARIYNP-HEKKLDSRTVSGYFIGYPDKSKGYRFY-----CPNHSV 1084

Query: 951  HVVFDESDSTSRTLENDDV 969
             +V       +R LEN ++
Sbjct: 1085 RIV---ETGNARFLENGEI 1100


>GSVIVT01024357001 assembled CDS
          Length = 851

 Score =  114 bits (284), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 61/130 (46%), Positives = 83/130 (63%), Gaps = 1/130 (0%)

Query: 827 TPQQNGVVECKNRTLQEMVRTMLSDSKLPKNFXAEAVNTACYILNRALVRSKLKKTPYEL 886
           TPQQNGVVE KN+T+ EM + ML +  LPK F  EAVNT  Y+LNR   ++ L KT  E 
Sbjct: 515 TPQQNGVVERKNQTVMEMAKAMLYEKGLPKFFWVEAVNTVVYLLNRCPTKALLNKTLIEA 574

Query: 887 YKGRKPNIGYFHIFGCKCFILDNKKNHLAKFDAKSYEGIFLGYSSNSKAYKVFNKKTLAV 946
           + GR P++ +F +FGC C+     K   +K D  S + IF+GYSS SK Y+++N KT  +
Sbjct: 575 WSGRNPSVRHFKVFGCLCYS-QVPKERRSKLDETSEKCIFMGYSSQSKGYRLYNLKTNKL 633

Query: 947 EESIHVVFDE 956
             S +V+F E
Sbjct: 634 IISRYVIFYE 643



 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 40/63 (63%)

Query: 1065 IEPKNLEDAQNDESSILAMQEELNQFEINQVWKLISRPKNHSVIGTKWVFRNKLDEQGNV 1124
            +EP++ E+A  DE    AM++E++  E N+ W+L+ +P +  +IG KW++R K    G +
Sbjct: 727  VEPQSFEEAIKDEDWRKAMEKEIDVIEKNETWQLVEKPIDKEIIGVKWIYRVKCHSDGYI 786

Query: 1125 VRN 1127
             +N
Sbjct: 787  CKN 789


>GSVIVT01034745001 assembled CDS
          Length = 2196

 Score =  101 bits (251), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 46/97 (47%), Positives = 65/97 (67%)

Query: 781 FARKIQNEKGYNISTIRSDHRGEFENQKFNAFCNELGIFYNFSAPRTPQQNGVVECKNRT 840
           F + ++ + G N+  +R+D+ GE+ +++ N FC E GI +   AP +PQQNGV E KNRT
Sbjct: 575 FKKMVETQSGQNVKVLRTDNGGEYISKELNVFCQEAGIVHQLIAPYSPQQNGVFERKNRT 634

Query: 841 LQEMVRTMLSDSKLPKNFXAEAVNTACYILNRALVRS 877
           + EM R ML + KLPK   AEAVNT+ Y+LNR   +S
Sbjct: 635 VMEMARCMLFEKKLPKLLWAEAVNTSVYLLNRLPTKS 671



 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 61/104 (58%)

Query: 67  KAINILRCALDATEYNKVSGCRSATEVXKKLRVTYEGTYRVKESRINILWREYKMFSMKE 126
           KAI  L   L    + K+    +   V  KL+  +EG+ R K  R+  L RE+++  MK+
Sbjct: 69  KAITCLHSGLTDHIFTKIMNLETPKLVWDKLQGEFEGSERFKTVRLLKLKREFELMKMKD 128

Query: 127 GETITELNSRFTNIVNPLRTLGKEISEDELVKKILRILPKKWDS 170
            E + + + R  ++VN +R LG+  ++ ++V+KI+ ++P+K+++
Sbjct: 129 DEFVKDYSGRLMDVVNQIRLLGEAFTDQKVVEKIMVLVPQKFEA 172


>GSVIVT01017026001 assembled CDS
          Length = 1273

 Score = 92.4 bits (228), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 78/158 (49%), Gaps = 5/158 (3%)

Query: 781  FARKIQNEKGYNISTIRSDHRGEFENQKFNAFCNELGIFYNFSAPRTPQQNGVVECKNRT 840
            F + ++N+    I   +SD   EF N  F A     GI +  S P TP QNG  E K+R 
Sbjct: 1114 FKKFVENQHFARIKVFQSDGGAEFTNTCFKAHLRTSGIHHQLSCPYTPAQNGRAERKHRH 1173

Query: 841  LQEMVRTMLSDSKLPKNFXAEAVNTACYILNRALVRSKLKKTPYELYKGRKPNIGYFHIF 900
            + E   T+L  S L   F  +A +TA YI+NR        K+P+EL  G  P+   FH F
Sbjct: 1174 VTETGLTLLFHSHLSPRFWVDAFSTATYIINRLPTPLLGGKSPFELLYGYSPHYENFHPF 1233

Query: 901  GCKCF--ILDNKKNHLAKFDAKSYEGIFLGYSSNSKAY 936
            GC+ +  + D   N   K   +S   IFLGYS + K +
Sbjct: 1234 GCRVYPCLRDYMPN---KLSPRSIPCIFLGYSPSHKGF 1268


>GSVIVT01037631001 assembled CDS
          Length = 1940

 Score = 63.9 bits (154), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 70/115 (60%), Gaps = 1/115 (0%)

Query: 66  AKAINILRCALDATEYNKVSGCRSATEVXKKLRVTYEGTYRVKESRINILWREYKMFSMK 125
           AKA   L  A+  + + K+    SA E+ + L+  Y+G  R+K  ++  L RE++M  M+
Sbjct: 786 AKAKACLFAAVSPSIFIKIMKIDSAAEIWEYLKEEYKGDERIKNMQVMNLIREFEMKKMR 845

Query: 126 EGETITELNSRFTNIVNPLRTLGKEISEDELVKKILRILPKKWDS-IGTVMNYKE 179
           E + + +  ++  +I + +R LGKE S +++V+KIL  LP+K+++ I ++ N K+
Sbjct: 846 ESDAVKDYAAQLLSIADKVRLLGKEFSNEKIVQKILVTLPEKYEATISSLENSKD 900


>GSVIVT01011363001 assembled CDS
          Length = 1752

 Score = 61.2 bits (147), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 70/115 (60%), Gaps = 1/115 (0%)

Query: 66  AKAINILRCALDATEYNKVSGCRSATEVXKKLRVTYEGTYRVKESRINILWREYKMFSMK 125
           AKA   L  A+  + + K+    SA E+ + L+  Y+G  R+K  ++  L RE++M  M+
Sbjct: 67  AKAKACLFAAVSPSIFIKIMKIDSAAEIWEYLKEEYKGDERIKNMQVMNLIREFEMKKMR 126

Query: 126 EGETITELNSRFTNIVNPLRTLGKEISEDELVKKILRILPKKWDS-IGTVMNYKE 179
           E + + +  ++  +I + +R LGKE S +++V+KIL  LP+K+++ I ++ N K+
Sbjct: 127 ESDAVKDYAAQLLSIADKVRLLGKEFSNEKIVQKILVTLPEKYEATISSLENSKD 181


>GSVIVT01015124001 assembled CDS
          Length = 780

 Score = 60.1 bits (144), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 74/128 (57%), Gaps = 2/128 (1%)

Query: 72  LRCALDATEYNKVSGCRSATEVXKKLRVTYEGTYRVKESRINILWREYKMFSMKEGETIT 131
           L   + +T + ++   ++  E+   L+  YEG  RVK  ++  L RE++M  MKE ETI 
Sbjct: 75  LFAVVSSTIFTRIMTLKTTNEIWNFLKKEYEGNERVKGMQVLNLIREFEMQRMKESETIK 134

Query: 132 ELNSRFTNIVNPLRTLGKEISEDELVKKILRILPKKWD-SIGTVMNYKE-TPVTYDYLIG 189
           + + +  +IVN +R LG + S   +V+KI   + +K++ +I ++ N K+ + +T   L+ 
Sbjct: 135 DYSDKLLSIVNKVRLLGVDFSNSRIVQKIFITVSEKFENTISSLENSKDVSSITLAELLN 194

Query: 190 ALVSEEMK 197
           AL ++E +
Sbjct: 195 ALQAQEQR 202