Jatropha Genome Database

JcCA0011592.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0011592.10 - phase: 0 
         (234 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01034778001 assembled CDS                                       445   e-126
GSVIVT01031736001 assembled CDS                                        78   3e-15

>GSVIVT01034778001 assembled CDS
          Length = 403

 Score =  445 bits (1145), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 210/234 (89%), Positives = 221/234 (94%)

Query: 1   MDLEAGRKRSGLEDIFISYHAEDDVQSTYAGALFHNGRNYHVSPSKKNDTLVYWSSSRCL 60
           MDLEAGRKRSG+EDIFISYHA+DDVQSTYAGALFHN RNYHVS  K NDTLVYWSSSRCL
Sbjct: 167 MDLEAGRKRSGVEDIFISYHAKDDVQSTYAGALFHNNRNYHVSSYKNNDTLVYWSSSRCL 226

Query: 61  AQRNQLAKSLLRLLPHHSFGKCLNNVGGLDMALNFYPECANDASVKPKWWDHLHCAMSHY 120
           +QRNQLAK+LLRLLPHHSFGKCLNNVGGLDMAL+ YPECAN+A   PKWWDHLHCAMSHY
Sbjct: 227 SQRNQLAKNLLRLLPHHSFGKCLNNVGGLDMALSLYPECANNAIEAPKWWDHLHCAMSHY 286

Query: 121 KFVLAIENTVTESYVTEKLFYALDSGAVPIYFGAPNVDDFVPPHSIIDGTKFISMEELAS 180
           KFVLAIENT+TESYVTEKLFYALDSGA+PIYFGAPNV DFVPPHSIIDGTKF S+EELA+
Sbjct: 287 KFVLAIENTMTESYVTEKLFYALDSGAIPIYFGAPNVLDFVPPHSIIDGTKFRSIEELAA 346

Query: 181 YIKKLANDPVAYAEYHAWRRCGVLGNYGKTRLASLDTLPCRLCEAVSRKGGRNA 234
           Y+K LANDPVAYAEYHAWRRCGVLGNYGKTR ASLDTLPCRLCE VSRKGGRNA
Sbjct: 347 YVKALANDPVAYAEYHAWRRCGVLGNYGKTRAASLDTLPCRLCEFVSRKGGRNA 400


>GSVIVT01031736001 assembled CDS
          Length = 504

 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 59/109 (54%), Gaps = 1/109 (0%)

Query: 116 AMSHYKFVLAIENTVTESYVTEKLFYALDSGAVPIYFGAPNVDDFVP-PHSIIDGTKFIS 174
           A+ HYKF LA EN+  E YVTEK F +L +G+VP+  GAPN+ DF P P SI+   +   
Sbjct: 262 ALKHYKFSLAFENSNEEDYVTEKFFQSLVAGSVPVVIGAPNIQDFAPSPGSILHIKELKD 321

Query: 175 MEELASYIKKLANDPVAYAEYHAWRRCGVLGNYGKTRLASLDTLPCRLC 223
            E +A  +K LA  P  Y +   W+  G   ++      +     CRLC
Sbjct: 322 AEPVAKTMKYLAEHPEEYNQSLRWKYEGPSDSFKALVDMAAVHSSCRLC 370