Jatropha Genome Database

JcCA0011081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0011081.10 - phase: 0 
         (214 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013072001 assembled CDS                                       118   2e-27

>GSVIVT01013072001 assembled CDS
          Length = 273

 Score =  118 bits (295), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/100 (60%), Positives = 73/100 (73%), Gaps = 10/100 (10%)

Query: 121 ADPPVRDDEW------EEEYAAAGNGSTSQSTGVVVEKDDNVGDLKRILVDTVYGTNFGF 174
           ADPP  +DEW      ++ Y  +GNG  + +   V    D VGDLKR LVDTVYGTNFGF
Sbjct: 9   ADPPRDEDEWGGDGDAKDAYIKSGNGIATAAAAEV----DEVGDLKRCLVDTVYGTNFGF 64

Query: 175 QASPEIRAEVLELVNQLEAMNPTQTPVDAAEVLDGNWVLL 214
           +A+ E+RAEV+ELVNQLEA+NPT  P +AAE+LDGNWVLL
Sbjct: 65  EATAEVRAEVVELVNQLEAVNPTPAPTEAAELLDGNWVLL 104