Jatropha Genome Database

JcCA0009771.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0009771.10 + phase: 0 
         (266 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009348001 assembled CDS                                       296   5e-81
GSVIVT01000162001 assembled CDS                                       263   6e-71
GSVIVT01033429001 assembled CDS                                       260   4e-70
GSVIVT01015425001 assembled CDS                                       252   2e-67
GSVIVT01015426001 assembled CDS                                       251   2e-67
GSVIVT01025450001 assembled CDS                                        48   4e-06

>GSVIVT01009348001 assembled CDS
          Length = 167

 Score =  296 bits (759), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 141/167 (84%), Positives = 156/167 (93%)

Query: 100 MIGLLASIKRPELFSKLILIGASPRFLNDVDYHGGFERADIENVFAAMEANYEAWVNGFA 159
           MIG+LASI+RPELF+KL+LIGASPRFLND DYHGGFE  +IE VF+AMEANY+AWV+GFA
Sbjct: 1   MIGILASIRRPELFTKLVLIGASPRFLNDHDYHGGFEEGEIEKVFSAMEANYDAWVHGFA 60

Query: 160 PLAVGADVPAAVREFSRTLFNMRPDITLFVSRTVFNSDLRGILGLVKAPCCIIQTARDVS 219
           PL+VGADVPAAVREFSRTLFNMRPDITLFVSRT+FNSDLRG+LGLVK PCCIIQTA+DVS
Sbjct: 61  PLSVGADVPAAVREFSRTLFNMRPDITLFVSRTIFNSDLRGVLGLVKVPCCIIQTAKDVS 120

Query: 220 VPASVAEYLKSHLGGRSTVEILRTEGHLPHLSAPGLLAQVLRRALSR 266
           VP SVA YLK+HLGGR+TVE+L  EGHLPHLSAP LLA VLRRALSR
Sbjct: 121 VPTSVALYLKNHLGGRNTVEMLNVEGHLPHLSAPMLLAPVLRRALSR 167


>GSVIVT01000162001 assembled CDS
          Length = 240

 Score =  263 bits (672), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 128/258 (49%), Positives = 173/258 (67%), Gaps = 29/258 (11%)

Query: 7   EALNVRVVGSGEKILVLAHGIGTDQSAWQRILPFFTQNYSVILYDLVCAGSVNPGYFDFR 66
           EA N++VVGSGE+I+VLAHG GTDQS W+ ++P    +Y VIL+D + AG+ NP YFDF 
Sbjct: 6   EAHNLKVVGSGEQIIVLAHGFGTDQSLWKHLVPHLVDDYRVILFDNMGAGTTNPEYFDFE 65

Query: 67  RYTTLDAFVDDLLYILDALRVHRCAYVGHSVSAMIGLLASIKRPELFSKLILIGASPRFL 126
           RY+ L+ +  D+L IL+ L+V  C +VGHSVSAMIG +ASI RP+LFSKLI I  SPR+L
Sbjct: 66  RYSNLEGYAYDVLAILEELQVQSCIFVGHSVSAMIGAIASITRPDLFSKLISINGSPRYL 125

Query: 127 NDVDYHGGFERADIENVFAAMEANYEAWVNGFAPLAVGADVPAAVREFSRTLFNMRPDIT 186
           NDVDY+GGFE+ D++ +F AM +NY+AW +GFAPLAVG D+                   
Sbjct: 126 NDVDYYGGFEQEDLDQLFEAMGSNYKAWCSGFAPLAVGGDM------------------- 166

Query: 187 LFVSRTVFNSDLRGILGLVKAPCCIIQTARDVSVPASVAEYLKSHLGGRSTVEILRTEGH 246
                     D   IL  V  PC I+Q+ +D++VP  V+EYL  +LGG S VE++ ++GH
Sbjct: 167 ----------DSVAILCHVTVPCHILQSIKDLAVPVVVSEYLHQNLGGESIVEVMTSDGH 216

Query: 247 LPHLSAPGLLAQVLRRAL 264
           LP LS+P ++  VL R +
Sbjct: 217 LPQLSSPDIVVPVLLRHI 234


>GSVIVT01033429001 assembled CDS
          Length = 270

 Score =  260 bits (665), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 123/264 (46%), Positives = 177/264 (67%), Gaps = 3/264 (1%)

Query: 2   GTSLLEALNVRVVGSGEKILVLAHGIGTDQSAWQRILPFFTQNYSVILYDLVCAGSVNPG 61
           G  ++EALN  V G+G + LVL+HG G DQS W  ++P+    + V+++DL+    VNP 
Sbjct: 8   GGGIIEALNATVHGNGTRTLVLSHGFGFDQSVWHYLIPYLACYFKVVVFDLIF---VNPN 64

Query: 62  YFDFRRYTTLDAFVDDLLYILDALRVHRCAYVGHSVSAMIGLLASIKRPELFSKLILIGA 121
            +D ++Y+  D++  DL+ +LD L V +  Y+GHS+SAMIG +A+ KRP+LF  LIL+G 
Sbjct: 65  LYDPKKYSNFDSYAQDLVCLLDQLNVKKTIYLGHSMSAMIGCIAATKRPDLFEHLILLGG 124

Query: 122 SPRFLNDVDYHGGFERADIENVFAAMEANYEAWVNGFAPLAVGADVPAAVREFSRTLFNM 181
           SPR+LN   Y+GGFER+DI+ +F A+  N+  WV  F P+AVG +  AA+ EF  +L  M
Sbjct: 125 SPRYLNAEGYYGGFERSDIDKIFEAINENFPVWVQNFVPMAVGINNSAAIAEFEYSLGRM 184

Query: 182 RPDITLFVSRTVFNSDLRGILGLVKAPCCIIQTARDVSVPASVAEYLKSHLGGRSTVEIL 241
           +P+I L V++TVF SDLR +L  VK PC IIQ+  D+  P  +A Y+K +LG  +TV+IL
Sbjct: 185 KPEIVLSVAKTVFLSDLRLVLPQVKVPCTIIQSREDIVAPTFIACYMKENLGDDATVKIL 244

Query: 242 RTEGHLPHLSAPGLLAQVLRRALS 265
            T+GH P L+A  LL   L + LS
Sbjct: 245 ETQGHFPQLTAFPLLLDALNQVLS 268


>GSVIVT01015425001 assembled CDS
          Length = 296

 Score =  252 bits (643), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 118/257 (45%), Positives = 170/257 (66%), Gaps = 1/257 (0%)

Query: 9   LNVRVVGSGEKILVLAHGIGTDQSAWQRILPFFTQNYSVILYDLVCAGSV-NPGYFDFRR 67
           +N R++GSG + +VLAHG G DQS W +I P   + Y V+++D   +GSV +P  +D  +
Sbjct: 1   MNARIIGSGNEAIVLAHGYGADQSFWDKITPSLARTYRVLVFDWNFSGSVKDPNLYDSAK 60

Query: 68  YTTLDAFVDDLLYILDALRVHRCAYVGHSVSAMIGLLASIKRPELFSKLILIGASPRFLN 127
           Y++ DAF DDL+ +L    +    ++GHS+S MIG +ASIKRPELF +LILIG+SPR+ N
Sbjct: 61  YSSYDAFADDLIALLVEFNLRASVFMGHSMSGMIGCIASIKRPELFKRLILIGSSPRYFN 120

Query: 128 DVDYHGGFERADIENVFAAMEANYEAWVNGFAPLAVGADVPAAVREFSRTLFNMRPDITL 187
           D +Y GGFE + IE +F+ ME+N++ W + FA L   A  P +V ++ ++L  MRP++ L
Sbjct: 121 DDNYEGGFESSVIEQMFSNMESNFDEWASYFASLVANAKNPLSVEKYEKSLRAMRPEVAL 180

Query: 188 FVSRTVFNSDLRGILGLVKAPCCIIQTARDVSVPASVAEYLKSHLGGRSTVEILRTEGHL 247
            V++TVF+ D R IL  V  PC IIQT  D +VP SVAEY++  + G +TVE +  +GH 
Sbjct: 181 SVAKTVFHCDERDILDKVMTPCTIIQTTNDAAVPNSVAEYMQKKIKGETTVEKIDMDGHF 240

Query: 248 PHLSAPGLLAQVLRRAL 264
           PHL+A      VL   L
Sbjct: 241 PHLNAHLQFLNVLGSVL 257


>GSVIVT01015426001 assembled CDS
          Length = 277

 Score =  251 bits (642), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 116/258 (44%), Positives = 173/258 (67%), Gaps = 1/258 (0%)

Query: 8   ALNVRVVGSGEKILVLAHGIGTDQSAWQRILPFFTQNYSVILYDLVCAGSV-NPGYFDFR 66
           A+N R++G G + +VLAHG G DQS W +I P   ++Y V+++D   +G+V +P  +D  
Sbjct: 11  AMNARMIGFGNEAIVLAHGFGGDQSLWDKITPHLARSYRVLVFDWNFSGAVKDPSLYDST 70

Query: 67  RYTTLDAFVDDLLYILDALRVHRCAYVGHSVSAMIGLLASIKRPELFSKLILIGASPRFL 126
           +Y++ DAF DDL+ +LD  ++    +VGHS+S MIG +ASIKRPELF +LI I ASPR+L
Sbjct: 71  KYSSYDAFADDLIALLDEFKLLASVFVGHSMSGMIGCIASIKRPELFKRLIFIAASPRYL 130

Query: 127 NDVDYHGGFERADIENVFAAMEANYEAWVNGFAPLAVGADVPAAVREFSRTLFNMRPDIT 186
           N  +Y GGFER++IE +FA +E++++ W + FAPLAV  + P +V +  + +  MRP++ 
Sbjct: 131 NANNYEGGFERSEIEQIFANIESDFDKWASNFAPLAVDVNDPLSVEKVEKCIRRMRPEVA 190

Query: 187 LFVSRTVFNSDLRGILGLVKAPCCIIQTARDVSVPASVAEYLKSHLGGRSTVEILRTEGH 246
           L +++TVF  D R IL  V  PC I+Q   D+  P SVAEY++  + G++TVEI+  +GH
Sbjct: 191 LPLAKTVFCCDHRDILDKVTTPCTIVQPTNDIVAPISVAEYMQKKIKGKTTVEIIDMDGH 250

Query: 247 LPHLSAPGLLAQVLRRAL 264
            P L+A   L  VL   L
Sbjct: 251 FPQLTAHLQLLSVLDSVL 268


>GSVIVT01025450001 assembled CDS
          Length = 375

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/123 (21%), Positives = 57/123 (46%), Gaps = 3/123 (2%)

Query: 8   ALNVRVVGSGEKILVLAHGIGTDQSAWQRILPFFTQNYSVILYDLVCAG---SVNPGYFD 64
           ++  +  G+    LVL HG G +   W++ +P   +++ V   DL+  G     NP  F 
Sbjct: 91  SIRYQCAGNSGPALVLVHGFGANSDHWRKNVPVLAKSHRVYSIDLIGYGYSDKPNPRNFG 150

Query: 65  FRRYTTLDAFVDDLLYILDALRVHRCAYVGHSVSAMIGLLASIKRPELFSKLILIGASPR 124
              + T + +   L      +      ++ +S+  ++GL A++  P++   ++L+  S R
Sbjct: 151 ADYFYTFETWATQLNDFCTDVVKDEAFFICNSIGGLVGLQAAVMEPQICKGIMLLNISLR 210

Query: 125 FLN 127
            L+
Sbjct: 211 MLH 213