Jatropha Genome Database

JcCA0009731.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0009731.20 + phase: 0 
         (290 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011002001 assembled CDS                                       249   1e-66
GSVIVT01018023001 assembled CDS                                       119   2e-27
GSVIVT01024551001 assembled CDS                                       117   7e-27
GSVIVT01001195001 assembled CDS                                       116   1e-26
GSVIVT01007135001 assembled CDS                                       103   9e-23
GSVIVT01009183001 assembled CDS                                       103   1e-22
GSVIVT01004476001 assembled CDS                                        83   2e-16
GSVIVT01029368001 assembled CDS                                        60   1e-09
GSVIVT01019499001 assembled CDS                                        52   3e-07

>GSVIVT01011002001 assembled CDS
          Length = 241

 Score =  249 bits (636), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 150/287 (52%), Positives = 177/287 (61%), Gaps = 47/287 (16%)

Query: 4   MTKKETSHRWWFDSHHSFRRSPWLQSTLGELDVKTKAMLKLIEEDADSFSQRAELFYKKR 63
           M  K+ SH WWFDSH+S RRSPWLQSTL ELD KTKAMLK+IEEDADSF +RAE++YKKR
Sbjct: 2   MRTKKQSHCWWFDSHNSPRRSPWLQSTLAELDEKTKAMLKIIEEDADSFGRRAEMYYKKR 61

Query: 64  PELISMVEDFYRTYRSLAERYDQLKSDSANRLLTTLASPFYTKCLPQKSMESPFYTKCQP 123
           PELI+MVEDFYR +RSLAERYDQ++SD   RL  TL      K LP + +          
Sbjct: 62  PELINMVEDFYRAHRSLAERYDQVRSDPGARLGPTL------KKLPMRKL---------- 105

Query: 124 QKLMEEMDQSCDSSSETYDPEDSAESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT 183
                      DS SET+D E+S ES                                  
Sbjct: 106 ----------YDSGSETFDSEESGES----------------EVDDPEQEDDTQLDEELG 139

Query: 184 RVIEVSSAVSNEEMAKLQEEIERLKEENRVQRDQLFKKDEEKREVIRQLSVAVDVLKLEN 243
              EVSS +SN E+ KL+EEIERLKEEN++Q+DQL +KDEEKREVIRQLS+AV VLK EN
Sbjct: 140 EEEEVSSGISNVEVMKLREEIERLKEENKIQKDQLMQKDEEKREVIRQLSLAVQVLKEEN 199

Query: 244 VELRKSVARDSPKTKRKSLFEFEKLKDIFAGKLFNGSSNSRGTLVAV 290
           V LRKS  + SP  K+ S  E  KLK  F GKLF G    R ++VA+
Sbjct: 200 VSLRKSATKASP--KKWSPIELNKLKASFLGKLFIG---PRPSVVAL 241


>GSVIVT01018023001 assembled CDS
          Length = 1112

 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/93 (59%), Positives = 71/93 (76%), Gaps = 5/93 (5%)

Query: 13  WWFDSHHSFRRSPWLQSTLGELDVKTKAMLKLIEEDADSFSQRAELFYKKRPELISMVED 72
           WW+DSH S + S WLQ  L ++DVK KAM+KLIEEDADSF++RAE++YKKRPEL+ +VE+
Sbjct: 15  WWWDSHISPKNSKWLQENLTDMDVKVKAMIKLIEEDADSFARRAEMYYKKRPELMKLVEE 74

Query: 73  FYRTYRSLAERYDQLKSD--SANRLLTTLASPF 103
           FYR YR+LAERYD    +   A+R   T+A  F
Sbjct: 75  FYRAYRALAERYDHATGELRQAHR---TMAEAF 104


>GSVIVT01024551001 assembled CDS
          Length = 596

 Score =  117 bits (293), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 55/100 (55%), Positives = 72/100 (72%)

Query: 2   MEMTKKETSHRWWFDSHHSFRRSPWLQSTLGELDVKTKAMLKLIEEDADSFSQRAELFYK 61
           ++ T+ + SH WW+DSH S + S WL   L E+D   K MLKLIEED DSF+++AE++Y+
Sbjct: 175 LKRTESKKSHSWWWDSHISPKNSKWLADNLEEMDQSVKRMLKLIEEDGDSFAKKAEMYYQ 234

Query: 62  KRPELISMVEDFYRTYRSLAERYDQLKSDSANRLLTTLAS 101
           KRPELIS VEDFYR YRSLAERYD +  +    +L+ L S
Sbjct: 235 KRPELISHVEDFYRIYRSLAERYDHVTGELRKNILSDLQS 274


>GSVIVT01001195001 assembled CDS
          Length = 1045

 Score =  116 bits (290), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 55/111 (49%), Positives = 73/111 (65%), Gaps = 9/111 (8%)

Query: 13  WWFDSHHSFRRSPWLQSTLGELDVKTKAMLKLIEEDADSFSQRAELFYKKRPELISMVED 72
           WW+DSH S + S WLQ  L ++D K K M+KLIEEDADSF++RAE++YKKRPEL+ +VE+
Sbjct: 15  WWWDSHISPKNSKWLQENLTDMDAKVKQMIKLIEEDADSFARRAEMYYKKRPELMKLVEE 74

Query: 73  FYRTYRSLAERYDQLKSDSANRLLTTLASPFYTKCLPQKSMESPFYTKCQP 123
           FYR YR+LAERYD   + +  +   T+A  F  +         PF T   P
Sbjct: 75  FYRAYRALAERYDH-ATGALRQAQRTMAEAFPNQV--------PFLTDDSP 116


>GSVIVT01007135001 assembled CDS
          Length = 783

 Score =  103 bits (257), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 46/95 (48%), Positives = 71/95 (74%), Gaps = 1/95 (1%)

Query: 9   TSHRWWFDSHHSFRRSPWLQSTLGELDVKTKAMLKLIEEDADSFSQRAELFYKKRPELIS 68
            ++ WW+ SH   ++S WL+  L +++ K + MLKLI+ED DSF++RAE++YK+RPELI+
Sbjct: 8   NAYSWWWASHIRTKQSKWLEQHLQDMEEKVQNMLKLIQEDGDSFAKRAEMYYKRRPELIN 67

Query: 69  MVEDFYRTYRSLAERYDQLKSDSANRLLTTLASPF 103
            VE+ Y++YR+LAERYD++ ++  N    TLAS F
Sbjct: 68  FVEETYKSYRALAERYDKISTELQN-ANNTLASIF 101


>GSVIVT01009183001 assembled CDS
          Length = 748

 Score =  103 bits (257), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 43/93 (46%), Positives = 70/93 (75%), Gaps = 2/93 (2%)

Query: 9   TSHRWWFDSHHSFRRSPWLQSTLGELDVKTKAMLKLIEEDADSFSQRAELFYKKRPELIS 68
            ++ WW+ SH   ++S WL+  L +++ K + MLK+I++D DSF+QRAE++Y+KRPELI+
Sbjct: 8   NAYSWWWASHIRTKQSKWLEQNLHDVEEKVQFMLKIIDDDGDSFAQRAEMYYRKRPELIN 67

Query: 69  MVEDFYRTYRSLAERYDQLKSD--SANRLLTTL 99
           +VE+++R YR++AERYD L  +   ANR + T+
Sbjct: 68  LVEEYFRAYRAIAERYDHLSRELQHANRTIATV 100


>GSVIVT01004476001 assembled CDS
          Length = 719

 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 56/70 (80%), Gaps = 1/70 (1%)

Query: 34  LDVKTKAMLKLIEEDADSFSQRAELFYKKRPELISMVEDFYRTYRSLAERYDQLKSDSAN 93
           ++ K + MLKLI+ED DSF++RAE++YK+RPELI+ VE+ Y++YR+LAERYD++ ++  N
Sbjct: 1   MEEKVQNMLKLIQEDGDSFAKRAEMYYKRRPELINFVEETYKSYRALAERYDKISTELQN 60

Query: 94  RLLTTLASPF 103
               TLAS F
Sbjct: 61  -ANNTLASIF 69


>GSVIVT01029368001 assembled CDS
          Length = 477

 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 48/72 (66%), Gaps = 8/72 (11%)

Query: 26  WLQSTLGELDVKTKAM-------LKLIEEDA-DSFSQRAELFYKKRPELISMVEDFYRTY 77
           WL STL E+D + K +        K+   DA D+F+QRAE +Y+KRP+L+++++D Y  Y
Sbjct: 130 WLLSTLAEMDERMKMLALNGNTKTKVEGGDATDTFAQRAESYYQKRPQLLALLQDLYNAY 189

Query: 78  RSLAERYDQLKS 89
            +LA+RY Q ++
Sbjct: 190 LTLADRYSQTQT 201


>GSVIVT01019499001 assembled CDS
          Length = 868

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 8/84 (9%)

Query: 11 HRW------WFDSHHSFRRSPWLQSTLGELDVKTKAMLKLI-EEDADSFSQRAELFYKKR 63
          H+W      +F +H    +   L+    E+D K K +L+LI EE  D      +   K++
Sbjct: 4  HQWRESIKSFFGNHIDPVKDEQLKGNKTEIDDKVKTLLELIKEEGLDEKDGNGDGNLKRQ 63

Query: 64 PELISMVEDFYRTYRSLAERYDQL 87
          P LI ++EDF+R Y+SL +RYD L
Sbjct: 64 P-LIELIEDFHRNYQSLYDRYDNL 86