Jatropha Genome Database

JcCA0009632.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0009632.10 + phase: 2 /partial
         (132 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031240001 assembled CDS                                       165   6e-42
GSVIVT01029178001 assembled CDS                                        90   3e-19

>GSVIVT01031240001 assembled CDS
          Length = 471

 Score =  165 bits (417), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 82/130 (63%), Positives = 101/130 (77%), Gaps = 16/130 (12%)

Query: 1   VFLAALVGMDKEEKVRVLDHLAKNMARGAMLLLRSANGARAFLYPVVDPCDLQGFEVLSV 60
           V+LAALVGMDKEEK++V+DHLAK+MA GA+L+LRSA+GARAFLYPV+DPCDL+GFEVLS+
Sbjct: 344 VYLAALVGMDKEEKIQVMDHLAKHMAPGALLMLRSAHGARAFLYPVIDPCDLRGFEVLSI 403

Query: 61  FHPTDEVINSVIIARKLDYGYNDHQIKPLHDLQQQGLVSNLILPTKCSEIEAFNPLNHGN 120
           FHPTDEVINSV++ARK           P+H       +  +ILP+KCSEI+ FNPL    
Sbjct: 404 FHPTDEVINSVVVARKF----------PMHVHSLDQGLGPMILPSKCSEIQVFNPL---- 449

Query: 121 MVEELTIEEK 130
             EELTIE+ 
Sbjct: 450 --EELTIEDS 457


>GSVIVT01029178001 assembled CDS
          Length = 160

 Score = 90.1 bits (222), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 41/62 (66%), Positives = 51/62 (82%)

Query: 15  VRVLDHLAKNMARGAMLLLRSANGARAFLYPVVDPCDLQGFEVLSVFHPTDEVINSVIIA 74
           V++L H+ K M  G  LL+RSA GARAFLYPVV+  DL GFEVL++FHPT+EVINSV++A
Sbjct: 96  VKILGHVRKYMKEGGTLLVRSAKGARAFLYPVVEEEDLLGFEVLTIFHPTNEVINSVVLA 155

Query: 75  RK 76
           RK
Sbjct: 156 RK 157