Jatropha Genome Database
- JcCA0009561.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0009561.20 - phase: 0 /TE/partial
(1128 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01014104001 assembled CDS 541 e-154
GSVIVT01028612001 assembled CDS 218 9e-57
GSVIVT01034745001 assembled CDS 185 1e-46
GSVIVT01017026001 assembled CDS 179 9e-45
GSVIVT01024357001 assembled CDS 133 4e-31
GSVIVT01021646001 assembled CDS 79 1e-14
GSVIVT01010555001 assembled CDS 73 7e-13
GSVIVT01013589001 assembled CDS 72 1e-12
GSVIVT01009548001 assembled CDS 72 2e-12
GSVIVT01022096001 assembled CDS 70 5e-12
GSVIVT01017188001 assembled CDS 53 7e-07
GSVIVT01018138001 assembled CDS 51 4e-06
>GSVIVT01014104001 assembled CDS
Length = 1354
Score = 541 bits (1394), Expect = e-154, Method: Compositional matrix adjust.
Identities = 272/518 (52%), Positives = 358/518 (69%), Gaps = 17/518 (3%)
Query: 92 RGCLNYRKPTDGERYVYVGNGDLVEVEAIGHFRLCLSTGYFLDLIDTFVIPSFRRNLISV 151
+G L RKP + E+++Y+GN VEV A+G +RL L TG+ +DL++TF +PS RNL+S+
Sbjct: 678 QGFLTTRKPKESEKFLYMGNRLKVEVVAVGTYRLLLETGHRMDLLNTFYVPSISRNLVSL 737
Query: 152 SFLDKSGFHCSFGDSIFTLSMNSKVLGTGCLNECDNLYMLDIDTSYHESLHV--TTRGTK 209
S LD +G+ F +L +NS +G+G L CD LY + ++ + ++L + G+K
Sbjct: 738 SKLDATGYSVLFSSGQLSLMLNSVTIGSGIL--CDGLYKISLNHEFAQALITLHSNVGSK 795
Query: 210 RKLNIDNSVVLWHRRLGHVSKSRIERLVFDGILDTLDYTGLDSCIECIKGKQTKQKRLGV 269
R L +NS +LWHRRLGH+S+ RIERLV +GIL LD+T C+ CIKGKQTK + G
Sbjct: 796 RGLINENSSILWHRRLGHISRERIERLVKEGILQNLDFTDFHVCVNCIKGKQTKHTKKGA 855
Query: 270 IRSSNVLELIHTDICGPFHIAARNGQRYFISFIDDYSRYGYLYLIHEKSESLDVFKSYKA 329
RS+ +LE+IHTDICGP I G++YFI+FIDD SRYGY+YL+HEKS+++D+F+ +
Sbjct: 856 TRSNELLEIIHTDICGPLSIPCFTGEKYFITFIDDLSRYGYVYLMHEKSQAIDIFEMFIT 915
Query: 330 EVENQLGKKIKSVRSDRGGEYYGKYDGSGEQRPGPFALFLQECGIVPQYTMPGTPSMNGV 389
EVE QL KKIK VRSD+GGEYYG+YD SG Q PGPFA FL++ GI QYTMPGTP NGV
Sbjct: 916 EVERQLDKKIKIVRSDQGGEYYGRYDESG-QNPGPFAKFLEKHGIRAQYTMPGTPQQNGV 974
Query: 390 SERRNRTLMDMVRSMISHSTLPESLWGEALKTAAYLLNRIPSKAVAKTPYELWTGRKPSL 449
+ERRNRTLM+MVRSM+S+S++P SLWGEALKTA Y+LNR+PSKAV KTP+ELWTGRKPSL
Sbjct: 975 AERRNRTLMEMVRSMMSYSSVPISLWGEALKTAMYILNRVPSKAVPKTPFELWTGRKPSL 1034
Query: 450 KHLHVWGCPAEARPYKPNETKLDSKTISSYFVGYSERSRGYKFYNPT-SRTFFETRIATF 508
+H+H+WGCPAEAR Y P+E KLDS+T+S YF+GY ++S+GY+FY P S ET A F
Sbjct: 1035 RHIHIWGCPAEARIYNPHEKKLDSRTVSGYFIGYPDKSKGYRFYCPNHSVRIVETGNARF 1094
Query: 509 FEDVDFGGRNKERNIVFEEEPSKDDSVLIP--FVVSDSVQTPVAPVTIQDPIQDN---AX 563
E+ + G N+ R + EE +P +V VQ ++D Q+N +
Sbjct: 1095 LENGEISGSNEPRKVDIEEIRVDIPPPFLPQEIIVPQPVQ------QVEDNEQNNRDGSL 1148
Query: 564 XXXXXXXXXXXXXXVQMPLRRSTRERRSAIPDDYIVFL 601
PLRRS RERR AI DDY+VFL
Sbjct: 1149 PLENIAIENAVEPPQPAPLRRSQRERRPAITDDYVVFL 1186
>GSVIVT01028612001 assembled CDS
Length = 3048
Score = 218 bits (556), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 141/434 (32%), Positives = 223/434 (51%), Gaps = 28/434 (6%)
Query: 107 VYVGNGDLVEVEAIGHFRLCLSTGYFLDLIDTFVIPSFRRNLISVSFLDKSGFHCSFGDS 166
V +GN + V G+ RL ++ + + F +P + NL+S+ L + G F
Sbjct: 348 VKLGNNTSMSVLGKGNVRLKVNEMTQI-ITGVFYVPELKNNLLSIGQLQEKGLTILFQHG 406
Query: 167 IFTLSMNSKVLGTGCLNECDNLYMLDIDTSYHESLHVTTRGTKRKLNIDNSVVLWHRRLG 226
+ + K L + ++ML +L T ++ + LWH R G
Sbjct: 407 KCKVFHSQKGLIMDTKMSSNRMFML-------YALSQPISSTCFNTVTEDILQLWHCRYG 459
Query: 227 HVS----KSRIERLVFDGILDTLDYTGLDSCIECIKGKQTKQK--RLGVIRSSNVLELIH 280
H+S K+ +R + +G+ + L C +C+ GKQ + + R++ +L+L+H
Sbjct: 460 HLSFQGLKTLQQRKMVNGLPQFQPPSKL--CKDCLVGKQHRSSIPKKSNWRAAEILQLVH 517
Query: 281 TDICGPFHIAARNGQRYFISFIDDYSRYGYLYLIHEKSESLDVFKSYKAEVENQLGKKIK 340
DICGP + + + +RY ++F DD+SR ++Y + EKSE+ VFKS+K VE + ++
Sbjct: 518 ADICGPINPISNSKKRYLLTFTDDFSRKTWVYFLVEKSEAFAVFKSFKTYVEKETSSFLR 577
Query: 341 SVRSDRGGEYYGKYDGSGEQRPGPFALFLQECGIVPQYTMPGTPSMNGVSERRNRTLMDM 400
+R+DRGGE+ + FA+F GI Q T TP NGV+ER+NRT+M+M
Sbjct: 578 CLRTDRGGEFTSQ----------EFAIFCDVHGIRRQLTAAYTPQQNGVAERKNRTIMNM 627
Query: 401 VRSMISHSTLPESLWGEALKTAAYLLNRIPSKAVA-KTPYELWTGRKPSLKHLHVWGCPA 459
VRSM+S LP++ W EA+ ++LNR P+ AV KTP E W KPS+ + V+GC +
Sbjct: 628 VRSMLSAKKLPKTFWPEAVNWTVHVLNRSPTFAVQNKTPEEAWGKLKPSVDYFRVFGCLS 687
Query: 460 EARPYKPNETKLDSKTISSYFVGYSERSRGYKFYNPTSRTFFETRIATFFEDVDFGGRNK 519
TKLD K+ S +G SE S+ Y+ Y+P S+ +R F ED ++ K
Sbjct: 688 HVHVPDSKRTKLDDKSFSCVLLGVSEESKAYRLYDPISQKIIISRDVVFEEDKNWDWDKK 747
Query: 520 -ERNIVFEEEPSKD 532
E IV + E D
Sbjct: 748 YEEAIVCDLEWGDD 761
>GSVIVT01034745001 assembled CDS
Length = 2196
Score = 185 bits (469), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 116/334 (34%), Positives = 184/334 (55%), Gaps = 32/334 (9%)
Query: 107 VYVGNGDLVEVEAIGHFRLCLSTGYFLDLI-DTFVIPSFRRNLISVSFLDKSGFHCSF-G 164
V +GNG++V+ + G + +ST ++ + IP +NL+SV+ + ++G+ F G
Sbjct: 363 VKLGNGEVVQAKGKG--TIAISTKRRTKIVTNVLYIPDLDQNLLSVAQMLRNGYAVFFKG 420
Query: 165 DSIFTLSMNSKVLGTGCLNECDNLYM-LDIDTSYHESLHVTTRGTKRKLNIDNSVVLWHR 223
+ F +++ K + +N +N Y+ LD+ G ID SVV WH+
Sbjct: 421 NFCFITNVHGKEIAKIKMN-GNNFYLKLDL-----------VEGHVFSAKIDESVV-WHK 467
Query: 224 RLGHVSKSRIERLVFDGILDTLDYTGLDS--CIECIKGKQTKQKRLGVI--RSSNVLELI 279
R GH + + + G+++ + +++ C C GKQ +Q + ++++ LELI
Sbjct: 468 RYGHFNLKSLRFMQEAGMVEDMPEISVNAQTCESCELGKQQRQPFPQNMSKKATHKLELI 527
Query: 280 HTDICGPFHIAARNGQRYFISFIDDYSRYGYLYLIHEKSESLDVFKSYKAEVENQLGKKI 339
++DICGP A+ + YF FIDD SR ++Y + KS+ L VFKS+K VE Q G+ +
Sbjct: 528 NSDICGPMSTASLSNNVYFALFIDDLSRMTWVYFLKTKSQVLSVFKSFKKMVETQSGQNV 587
Query: 340 KSVRSDRGGEYYGKYDGSGEQRPGPFALFLQECGIVPQYTMPGTPSMNGVSERRNRTLMD 399
K +R+D GGEY K +F QE GIV Q P +P NGV ER+NRT+M+
Sbjct: 588 KVLRTDNGGEYISK----------ELNVFCQEAGIVHQLIAPYSPQQNGVFERKNRTVME 637
Query: 400 MVRSMISHSTLPESLWGEALKTAAYLLNRIPSKA 433
M R M+ LP+ LW EA+ T+ YLLNR+P+K+
Sbjct: 638 MARCMLFEKKLPKLLWAEAVNTSVYLLNRLPTKS 671
>GSVIVT01017026001 assembled CDS
Length = 1273
Score = 179 bits (453), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 132/403 (32%), Positives = 202/403 (50%), Gaps = 37/403 (9%)
Query: 103 GERYVYVGNGDLVEVEAIGHFRLCLSTGYFLDLIDTFVIPSFRRNLISVSFLDKS-GFHC 161
G+ V VGNG + + G LS+ + L+D V+P +NL+S+S L
Sbjct: 898 GKDSVIVGNGASLPITHTG----TLSSVPNIHLLDVLVVPHLIKNLLSISKLTSDFPLSV 953
Query: 162 SFGDSIFTLS--MNSKVLGTGCLNECDNLYMLDIDTSYHESLHVTTRGTKRKLNIDNSVV 219
+F +++FT+ +V+ TG LY+L+ S S+ + ++ S
Sbjct: 954 TFTNNLFTVQNRQTGRVVATG--KRDGGLYVLERGNSAFISV-------LKNKSLRASYD 1004
Query: 220 LWHRRLGHVSKSRIERLVFDGILDTLDYTGLDSCIECIKGKQTKQKRLGVIR----SSNV 275
LWH RLGHV+ I L G L + L S C + K RL R SS+V
Sbjct: 1005 LWHARLGHVNYFVISFLHKKGHLSLMSL--LPSPSLCSTCQLAKNHRLPYSRNEHRSSHV 1062
Query: 276 LELIHTDICGPFHIAARNGQRYFISFIDDYSRYGYLYLIHEKSESLDVFKSYKAEVENQL 335
L+LIH D+ GP I + +G Y++ FIDDYSR+ +LY + KS+ D+F +K VENQ
Sbjct: 1063 LDLIHCDLPGPSPIKSNSGFLYYVIFIDDYSRFTWLYPLKFKSDFFDIFLQFKKFVENQH 1122
Query: 336 GKKIKSVRSDRGGEYYGKYDGSGEQRPGPFALFLQECGIVPQYTMPGTPSMNGVSERRNR 395
+IK +SD G E+ F L+ GI Q + P TP+ NG +ER++R
Sbjct: 1123 FARIKVFQSDGGAEFTNTC----------FKAHLRTSGIHHQLSCPYTPAQNGRAERKHR 1172
Query: 396 TLMDMVRSMISHSTLPESLWGEALKTAAYLLNRIPSKAV-AKTPYELWTGRKPSLKHLHV 454
+ + +++ HS L W +A TA Y++NR+P+ + K+P+EL G P ++ H
Sbjct: 1173 HVTETGLTLLFHSHLSPRFWVDAFSTATYIINRLPTPLLGGKSPFELLYGYSPHYENFHP 1232
Query: 455 WGCPAEA--RPYKPNETKLDSKTISSYFVGYSERSRGYKFYNP 495
+GC R Y PN KL ++I F+GYS +G+ + P
Sbjct: 1233 FGCRVYPCLRDYMPN--KLSPRSIPCIFLGYSPSHKGFHYNLP 1273
>GSVIVT01024357001 assembled CDS
Length = 851
Score = 133 bits (335), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 90/298 (30%), Positives = 145/298 (48%), Gaps = 23/298 (7%)
Query: 379 TMPGTPSMNGVSERRNRTLMDMVRSMISHSTLPESLWGEALKTAAYLLNRIPSKAV-AKT 437
T+ TP NGV ER+N+T+M+M ++M+ LP+ W EA+ T YLLNR P+KA+ KT
Sbjct: 511 TIAYTPQQNGVVERKNQTVMEMAKAMLYEKGLPKFFWVEAVNTVVYLLNRCPTKALLNKT 570
Query: 438 PYELWTGRKPSLKHLHVWGCPAEARPYKPNETKLDSKTISSYFVGYSERSRGYKFYNPTS 497
E W+GR PS++H V+GC ++ K +KLD + F+GYS +S+GY+ YN +
Sbjct: 571 LIEAWSGRNPSVRHFKVFGCLCYSQVPKERRSKLDETSEKCIFMGYSSQSKGYRLYNLKT 630
Query: 498 RTFFETRIATFFEDVDFGGRNKERNIVFEEEPSKDDSVLIPFVVSDSVQTPVAPVTIQDP 557
+R F+E + N E+ + ++ D+ + V+T + P
Sbjct: 631 NKLIISRYVIFYEKAAW---NWEKGKILKKTILVDE-----LQIKTPVETGNGSTSTSSP 682
Query: 558 IQDNAXXXXXXXXXXXXXXXVQMPLRRSTRERRSAIPDDYIVFLQEHEDTVDMIDDDPVS 617
QD+ + R+ RS L + ++ +P S
Sbjct: 683 -QDSPRSVPLSSSTESPTSSSSS-PSSTPRKMRS---------LSDVYKRCNLCIVEPQS 731
Query: 618 FYHAMQSSDSHKWIEAMNEEYKSMQDNQVWDLVQLPEGKKPIGCKWIFKTKRDSQGNV 675
F A++ D W +AM +E ++ N+ W LV+ P K+ IG KWI++ K S G +
Sbjct: 732 FEEAIKDED---WRKAMEKEIDVIEKNETWQLVEKPIDKEIIGVKWIYRVKCHSDGYI 786
>GSVIVT01021646001 assembled CDS
Length = 468
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 68/120 (56%), Gaps = 4/120 (3%)
Query: 92 RGCLNYRKPTDGERYVYVGNGDLVEVEAIGHFRLCLSTGYFLDLIDTFVIPSFRRNLISV 151
+G N RKP E+++ GN VEAIG L L++G+ L+L TF +PSF RNLISV
Sbjct: 342 QGMQNLRKPVTSEQFILSGNKMGSHVEAIGTCYLTLNSGFVLELQKTFYVPSFSRNLISV 401
Query: 152 SFLDKSGFHCSFGDSIFTLSMNSKVLGTGCLNECDNLYMLDIDTS-YHESLHVTTRGTKR 210
S L G+ F ++ F+L S +G G L+ D LY + + H SLHV T G K+
Sbjct: 402 SRLVPFGYSFHFSETSFSLIYKSDCVGNGILS--DGLYCIFLQNDIVHNSLHVQT-GIKK 458
>GSVIVT01010555001 assembled CDS
Length = 147
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 725 MDVKTAFLNGDIDETIFMVQPENFVIGDPKHLVCKLKKSIYGLKQASRQWYFKFNQVIVS 784
MDVK AFLNGD+ E ++M P + K VC L++++YGLKQA R W+ KF+ I
Sbjct: 1 MDVKNAFLNGDLSEEVYMQPPPGLSVESNK--VCHLRRALYGLKQAPRAWFAKFSSTIFR 58
Query: 785 FGFEANTVENCVYHKFSGSRFIFLVLYVD 813
G+ A+ ++ ++ + + I L+LY +
Sbjct: 59 LGYTASPYDSALFLRRTDKGTILLLLYSN 87
>GSVIVT01013589001 assembled CDS
Length = 281
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 56/101 (55%)
Query: 92 RGCLNYRKPTDGERYVYVGNGDLVEVEAIGHFRLCLSTGYFLDLIDTFVIPSFRRNLISV 151
+G N RKP E+ +Y GN VEA+G L LS+G+ DL TF +PSF RNLIS+
Sbjct: 28 QGMRNLRKPMLSEQCIYSGNKMRSHVEAVGTCSLVLSSGFIFDLEKTFYVPSFSRNLISI 87
Query: 152 SFLDKSGFHCSFGDSIFTLSMNSKVLGTGCLNECDNLYMLD 192
S + G+ SF ++ F+L S ++G G L + +
Sbjct: 88 SRVVPLGYSFSFYETSFSLFYKSNLVGNGTFKSVSELGLFN 128
>GSVIVT01009548001 assembled CDS
Length = 849
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 39/57 (68%)
Query: 876 FSMQNSRPLDTPIAKGDKFSNQQCPKSELEIQEMQKVPYASAVGSLMYVQVCTRPDI 932
F+M + D + KGDK N+ CPK++LE M+ +PYASA+GSLMY Q C RP+I
Sbjct: 558 FNMHTCKDGDVLVVKGDKLGNEHCPKNDLEKDAMKAIPYASAIGSLMYAQACIRPNI 614
>GSVIVT01022096001 assembled CDS
Length = 390
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 130/304 (42%), Gaps = 45/304 (14%)
Query: 109 VGNGDLVEVEAIGHFRLCLSTGYFLDLIDTFVIPSFRRNLISVS-FLDKSGFHCSFGDSI 167
+G+ + + G L S FL L D F +PS + NLI VS F + F
Sbjct: 2 IGDDTSLPITHTGSSTLQSSPHSFL-LHDVFCVPSMKHNLIYVSQFFLTNNVSIEF---- 56
Query: 168 FTLSMNSKVLGTGCLNECDNLYMLDIDTSYHE-SLHVTTRGTKRKLNIDNSVVLWHRRLG 226
F S K L TG DN D Y ++H ++ +I S WH LG
Sbjct: 57 FPRSFLMKDLRTGATLLIDN----SKDGVYKWLTIHEKSKPLLIFASIKASTSNWHHHLG 112
Query: 227 HVSKSRIERLVFDGILDTLDYTGL-----DSCIECIKGKQTKQKRLGVIRSS----NVLE 277
H S + L+ ++ L +T + +SC C K +L SS + L+
Sbjct: 113 HPSTKVLSHLMSSQLIH-LSFTSIRNFSYNSC-HC-----NKSHKLHFFASSPTSTSSLQ 165
Query: 278 LIHTDI-CGPFHIAARNGQRYFISFIDDYSRYGYLYLIHEKSESLDVFKSYKAEVENQLG 336
L+++D+ C P + + N +Y++ FID +++Y + YL + LD+F +K VE +
Sbjct: 166 LLYSDVWCSP--VESFNDNKYYVIFIDHFTKYIWFYL---NYDVLDIFIHFKLLVEKKFN 220
Query: 337 KKIKSVRSDRGGEYYGKYDGSGEQRPGPFALFLQECGIVPQYTMPGTPSMNGVSERRNRT 396
K+I + ++ E FL G+ T TP NG SE R+R
Sbjct: 221 KQIIHLYTNNCEECLA------------LNFFLAHHGVSHFTTHSHTPEHNGYSECRHRE 268
Query: 397 LMDM 400
L+++
Sbjct: 269 LLEL 272
>GSVIVT01017188001 assembled CDS
Length = 1646
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 220 LWHRRLGHVSKSRIERLVFDGILDTLDYTGLDSCIECIKGKQTKQKRLGVIRSSNVLELI 279
LWH RLGH + ++ L +L L + K L I++SN+L+LI
Sbjct: 49 LWHARLGHPVANILKLLKPIILLYVL-------LVNMEKATNYHFHFLSPIKASNILDLI 101
Query: 280 HTDICGPFHIAARNGQRYFISFIDDYSRY 308
HT++ GP I A G RYF+ F+DD SR+
Sbjct: 102 HTNLWGPSPIPASIGARYFLLFVDDCSRF 130
>GSVIVT01018138001 assembled CDS
Length = 98
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 777 KFNQVIVSFGFEANTVENCVYHKFSGSRFIFLVLYVDDILLATNCKVLLHETKVFLSKHF 836
K ++ ++SFGF + + ++ +F+ S ++ +YVDDIL+ ++ + L+ F
Sbjct: 8 KLHRALLSFGFVSTKSDQSLFLRFTPSHITYVFVYVDDILVTSSDTTAITSLIAQLNSKF 67
Query: 837 EMKDLGEASFVLGIQIHRDRSRDILGLSQKSYI 869
+KDLGE + L IQ+ + + L LSQ YI
Sbjct: 68 SLKDLGEVHYFLVIQV--SYTNNGLHLSQTKYI 98