Jatropha Genome Database
- JcCA0009532.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0009532.10 - phase: 0
(429 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01021144001 assembled CDS 407 e-114
GSVIVT01029942001 assembled CDS 97 2e-20
GSVIVT01016360001 assembled CDS 75 4e-14
GSVIVT01008424001 assembled CDS 75 8e-14
GSVIVT01011738001 assembled CDS 73 2e-13
GSVIVT01009453001 assembled CDS 73 3e-13
GSVIVT01025075001 assembled CDS 72 7e-13
GSVIVT01026638001 assembled CDS 71 1e-12
GSVIVT01018787001 assembled CDS 71 1e-12
GSVIVT01013388001 assembled CDS 70 2e-12
GSVIVT01026636001 assembled CDS 69 4e-12
>GSVIVT01021144001 assembled CDS
Length = 464
Score = 407 bits (1047), Expect = e-114, Method: Compositional matrix adjust.
Identities = 222/373 (59%), Positives = 250/373 (67%), Gaps = 13/373 (3%)
Query: 1 MASSNRHWPSMFKSKPCTSHHHQWQHEINSSSLVSSGCHKSPYTSVPGCEERSPEPKPRW 60
MASSNRHWPSMFKSKPC +HH QWQH+IN S L+SSGCH+ PYTSVPGCEERSPEPKPRW
Sbjct: 1 MASSNRHWPSMFKSKPCNTHH-QWQHDINPS-LISSGCHRPPYTSVPGCEERSPEPKPRW 58
Query: 61 NPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLR 120
NPKPEQIRILEAIFNSGMVNPPRDEIR+IRAQLQE+GQVGDANVFYWFQNRKSRSKHK R
Sbjct: 59 NPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEFGQVGDANVFYWFQNRKSRSKHKQR 118
Query: 121 HLQNSKQQTYQNPSVXXXXXXXXXXXXXXXXXXXXXPKGSRRTLSLTSPNVVDVSNSPTG 180
HLQ SKQQ Q P + K S ++L L S +DVSNSPT
Sbjct: 119 HLQTSKQQPQQTPPITSNASITPSSSSSSSEKSSP--KESNKSLPLGSAGFMDVSNSPTA 176
Query: 181 SVNQTYFQAHNEFMTEPXXXXXXXXXXXXXXXXXXXXCFSDLSNVAQVQDNTVGPCTXXX 240
+NQTYFQ EF+ EP CFS+LSNV Q+ D TVG +
Sbjct: 177 PLNQTYFQNSGEFLQEP--LFFPVPQTGGSTVFSHGLCFSELSNVVQIPDQTVGAYSGLL 234
Query: 241 XXXXXXXXXXXDH-ENKNIKMQPNLSYPVTAPITHTIGLSPPFPLNPNSVTVPSTVNQIQ 299
+ E + +K+Q LSY V T P ++T+P T+NQIQ
Sbjct: 235 LTELMNQGVSKKYDEEEKMKLQQQLSYTVATLPPTTSVPP------PTTLTLPFTINQIQ 288
Query: 300 GVGESSPAGSSVAARSTVFINDVAIEVGVGPFNLREAFGDDFLLIHSSGQPVLTNEWGLT 359
GVGES G + AA+STVFINDVA EV VGPFN+REAFGDD +LI+S G PVLTNEWG T
Sbjct: 289 GVGESGALGPTSAAKSTVFINDVAFEVAVGPFNVREAFGDDAVLINSYGHPVLTNEWGAT 348
Query: 360 LHSLQHGASYYLV 372
L SLQHGA YYLV
Sbjct: 349 LQSLQHGAFYYLV 361
>GSVIVT01029942001 assembled CDS
Length = 236
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/75 (66%), Positives = 59/75 (78%)
Query: 51 ERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQN 110
ER+ + RW PKPEQI ILE+IFNSGMVNPP+DE RIR L+ YG VGDANVFYWFQN
Sbjct: 11 ERNEPVRSRWTPKPEQIIILESIFNSGMVNPPKDETVRIRKLLEPYGSVGDANVFYWFQN 70
Query: 111 RKSRSKHKLRHLQNS 125
R+SRS+ + R +Q S
Sbjct: 71 RRSRSRRRQRQIQAS 85
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 44/60 (73%)
Query: 316 TVFINDVAIEVGVGPFNLREAFGDDFLLIHSSGQPVLTNEWGLTLHSLQHGASYYLVPLS 375
TVFIN V EV G F+++ FG DF+L+HSSG PV NE+G ++ SLQHG SY+LV ++
Sbjct: 176 TVFINGVPTEVPKGSFDMKAMFGQDFVLVHSSGVPVPFNEFGFSMQSLQHGESYFLVSIA 235
>GSVIVT01016360001 assembled CDS
Length = 173
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 44/64 (68%)
Query: 59 RWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 118
RWNP EQ+++L +F SG+ P D+I++I +QL YG++ NVFYWFQN K+R + K
Sbjct: 28 RWNPTTEQVKVLTDLFRSGLRTPSTDQIQKISSQLSFYGKIESKNVFYWFQNHKARERQK 87
Query: 119 LRHL 122
R +
Sbjct: 88 RRRV 91
>GSVIVT01008424001 assembled CDS
Length = 347
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 42/62 (67%)
Query: 59 RWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 118
RWNP PEQ+R LE ++ G P ++I+ I AQL+ YG++ NVFYWFQN K+R + K
Sbjct: 78 RWNPTPEQLRTLEELYRRGTRTPSAEQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQK 137
Query: 119 LR 120
R
Sbjct: 138 RR 139
>GSVIVT01011738001 assembled CDS
Length = 337
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 59 RWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 118
RWNP PEQ++ LE ++ G P ++I++I AQL+ +G++ NVFYWFQN K+R + K
Sbjct: 86 RWNPTPEQLQALEELYRRGTRTPTAEQIQQIAAQLRLFGKIEGKNVFYWFQNHKARERQK 145
Query: 119 LRH--LQNSKQQTYQNPSV 135
R +S++Q N S+
Sbjct: 146 RRRELESDSEEQQRDNGSL 164
>GSVIVT01009453001 assembled CDS
Length = 211
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%)
Query: 59 RWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 118
RWNP EQI ILE ++ SGM P +I +I AQL +YG++ NVFYWFQN K+R + K
Sbjct: 78 RWNPTQEQIGILEMLYKSGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQK 137
>GSVIVT01025075001 assembled CDS
Length = 132
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 43/68 (63%)
Query: 53 SPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRK 112
SP RW P PEQ+ ILE ++ G+ P +I++I A L YG++ NVFYWFQN K
Sbjct: 2 SPAASSRWCPTPEQLMILEEMYRGGVRTPNASQIQQITAHLSFYGKIEGKNVFYWFQNHK 61
Query: 113 SRSKHKLR 120
+R + KLR
Sbjct: 62 ARDRQKLR 69
>GSVIVT01026638001 assembled CDS
Length = 239
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 43/62 (69%)
Query: 57 KPRWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSK 116
+ RW P P Q++ILE IF+ G P + +I+ I + L ++GQ+ + NV+ WFQNR++RSK
Sbjct: 63 RQRWTPTPVQLQILERIFDQGYGTPSKQKIKEITSDLSQHGQISETNVYNWFQNRRARSK 122
Query: 117 HK 118
K
Sbjct: 123 RK 124
>GSVIVT01018787001 assembled CDS
Length = 280
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
Query: 59 RWNPKPEQIRILEAIF-NSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKH 117
RW P +QIRIL+ ++ N+G+ +P ++I+RI A+L++YG++ NVFYWFQN K+R +
Sbjct: 37 RWTPTTDQIRILKDLYYNNGVRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQ 96
Query: 118 KLR 120
K R
Sbjct: 97 KKR 99
>GSVIVT01013388001 assembled CDS
Length = 279
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 43/62 (69%)
Query: 57 KPRWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSK 116
+ RW P P Q++ILE IF+ G P + +I+ I +L ++GQ+ + NV+ WFQNR++RSK
Sbjct: 96 RQRWTPTPVQLQILERIFDQGNGTPSKQKIKEITTELTQHGQISETNVYNWFQNRRARSK 155
Query: 117 HK 118
K
Sbjct: 156 RK 157
>GSVIVT01026636001 assembled CDS
Length = 236
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 43/62 (69%)
Query: 57 KPRWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSK 116
+ RW P P Q++ILE IF+ G P + +I+ I + L ++GQ+ + NV+ WFQNR+++SK
Sbjct: 60 RQRWTPTPVQLQILERIFDQGYGTPSKQKIKEITSDLSQHGQISETNVYNWFQNRRAQSK 119
Query: 117 HK 118
K
Sbjct: 120 RK 121