Jatropha Genome Database

JcCA0008331.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0008331.10 + phase: 0 /partial
         (340 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01030141001 assembled CDS                                       544   e-155
GSVIVT01017911001 assembled CDS                                       344   3e-95
GSVIVT01009747001 assembled CDS                                       323   6e-89
GSVIVT01028270001 assembled CDS                                       316   1e-86
GSVIVT01023805001 assembled CDS                                       311   4e-85
GSVIVT01038262001 assembled CDS                                       268   2e-72

>GSVIVT01030141001 assembled CDS
          Length = 509

 Score =  544 bits (1402), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 281/339 (82%), Positives = 299/339 (88%), Gaps = 13/339 (3%)

Query: 2   MASAAAIGALKVPLPASSSTNSSKLNRKTXXXXXXXXXXXXXXXGDKIYYKAFSGRPGNG 61
           MAS +A+G   V +P SS +     + +T               G+KI +KA       G
Sbjct: 1   MASLSALGVTGV-VPTSSKSRDLPSSHRTLSFSSRIS-------GNKITWKA-----SLG 47

Query: 62  SNERTPMVVSPKAVSDSKNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLG 121
           S+ R P++VSPKAVSDS+NSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLG
Sbjct: 48  SHRRAPVIVSPKAVSDSRNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLG 107

Query: 122 ANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQ 181
           ANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQ
Sbjct: 108 ANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQ 167

Query: 182 SPENPNWFQGTADAVRQYLWLFEEHNVLEFLILAGDHLYRMDYERFIQAHRETDADITVA 241
           SPENPNWFQGTADAVRQYLWLFEEHNVLEFL+LAGDHLYRMDYERFIQAHRETDADITVA
Sbjct: 168 SPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVA 227

Query: 242 ALPMDEARATAFGLMKIDEEGRIVEFAEKPKGEQLKAMKVDTTILGLDDERAKEMPYIAS 301
           ALPMDE RATAFGLMKIDEEGRI+EFAEKPKGEQLKAMKVDTTILGLDDERAKEMPYIAS
Sbjct: 228 ALPMDEKRATAFGLMKIDEEGRIIEFAEKPKGEQLKAMKVDTTILGLDDERAKEMPYIAS 287

Query: 302 MGIYVVSKNAMLDLLRDRFPGANDFGSEVIPGATSIGMR 340
           MGIYVVSK+ MLDLLRD+FPGANDFGSEVIPGATS+G+R
Sbjct: 288 MGIYVVSKDVMLDLLRDQFPGANDFGSEVIPGATSLGLR 326


>GSVIVT01017911001 assembled CDS
          Length = 482

 Score =  344 bits (883), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 162/272 (59%), Positives = 210/272 (77%), Gaps = 5/272 (1%)

Query: 68  MVVSPKAVSDSKNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLI 127
           M ++    +DSK     ++    R+V+ +ILGGGAGTRL+PLTK+RAKPAVP+G +YRLI
Sbjct: 24  MSLATDVAADSKLRDLEMEKRDPRTVVAVILGGGAGTRLFPLTKRRAKPAVPIGGSYRLI 83

Query: 128 DIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP--EN 185
           D+P+SNC+NS I+K+Y+LTQFNSASLNRHL+RAY    G    +G+VE LAA Q+P    
Sbjct: 84  DVPMSNCINSGINKVYILTQFNSASLNRHLARAYNFGHGVNFGDGYVEALAATQTPGEAG 143

Query: 186 PNWFQGTADAVRQYLWLFEEH---NVLEFLILAGDHLYRMDYERFIQAHRETDADITVAA 242
             WFQGTADAVRQ+ WLFE+     + + LIL+GDHLYRMDY  F+Q HR++ ADIT++ 
Sbjct: 144 KRWFQGTADAVRQFHWLFEDQRSKEIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISC 203

Query: 243 LPMDEARATAFGLMKIDEEGRIVEFAEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASM 302
           LPMD++RA+ FGLMKID +GR++ F+EKPKGE LKAM+VDT +LGL  E A++ PYIASM
Sbjct: 204 LPMDDSRASDFGLMKIDNKGRVLFFSEKPKGEDLKAMEVDTKVLGLSREEAEKKPYIASM 263

Query: 303 GIYVVSKNAMLDLLRDRFPGANDFGSEVIPGA 334
           G+YV  K  +L+LLR RFP ANDFGSE+IP +
Sbjct: 264 GVYVFKKEILLNLLRWRFPTANDFGSEIIPAS 295


>GSVIVT01009747001 assembled CDS
          Length = 524

 Score =  323 bits (829), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 152/249 (61%), Positives = 194/249 (77%), Gaps = 5/249 (2%)

Query: 92  SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSA 151
           SV  IILGGGAGTRL+PLT +RAKPAVP+G  YRLID+P+SNC+NS I KI++LTQFNSA
Sbjct: 90  SVAAIILGGGAGTRLFPLTSRRAKPAVPIGGCYRLIDVPMSNCINSGIRKIFILTQFNSA 149

Query: 152 SLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP--ENPNWFQGTADAVRQYLWLFEE---H 206
           SLNRH++R Y    G    +GFVEVLAA Q+P      WFQGTADAVRQ++W+FE+    
Sbjct: 150 SLNRHIARIYNFGNGVNFGDGFVEVLAATQTPGEAGQKWFQGTADAVRQFIWVFEDAKNK 209

Query: 207 NVLEFLILAGDHLYRMDYERFIQAHRETDADITVAALPMDEARATAFGLMKIDEEGRIVE 266
           NV   LIL+GDHLYRMDY  F+Q H +++ADITV+ +PMD++RA+ +GLMKID  GRI++
Sbjct: 210 NVEHILILSGDHLYRMDYMDFVQKHIDSNADITVSCVPMDDSRASDYGLMKIDNTGRIIQ 269

Query: 267 FAEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVVSKNAMLDLLRDRFPGANDF 326
           F+EKPKG  LKAMKV+TT+LGL ++ A++ PYIASMG+YV   + +L LL  ++   NDF
Sbjct: 270 FSEKPKGPNLKAMKVNTTLLGLSEKEAEKCPYIASMGVYVFRTDVLLKLLTRKYLSCNDF 329

Query: 327 GSEVIPGAT 335
           GSE+IP A 
Sbjct: 330 GSEIIPLAV 338


>GSVIVT01028270001 assembled CDS
          Length = 476

 Score =  316 bits (809), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 161/270 (59%), Positives = 196/270 (72%), Gaps = 22/270 (8%)

Query: 87  PDAS-RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVL 145
           P+A  ++V  IILGGGAGTRL+PLTK RAKPAVP+G  YRLID+P+SNC+NS I+KIY+L
Sbjct: 20  PEADPKTVASIILGGGAGTRLFPLTKSRAKPAVPIGGCYRLIDVPMSNCINSGINKIYIL 79

Query: 146 TQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP--ENPNWFQGTADAVRQYLWLF 203
           TQFNS SLNRH++R Y    G    +GFVEVLAA Q+       WFQGTADAVRQ++WLF
Sbjct: 80  TQFNSQSLNRHIARTYNLGSGVNFGDGFVEVLAATQTSGESGKKWFQGTADAVRQFIWLF 139

Query: 204 EE--HNVLE-FLILAGDHLYRMDYERFIQAHRETDADITVAALPMDEARATAFGLMKIDE 260
           E+  H  +E  LIL+GDHLYRMDY  F+Q H ++DADI+V+ LPMDE+RA+ FGL+KIDE
Sbjct: 140 EDARHRHIENILILSGDHLYRMDYMEFVQKHIDSDADISVSCLPMDESRASDFGLIKIDE 199

Query: 261 EGRIVEFAEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVVSKNAMLDLLRDRF 320
            G+I +F EKPKGE LK+M+VDTT LGL    AK+ PYIASMGIY+   + +L LL   F
Sbjct: 200 MGQIRQFLEKPKGETLKSMRVDTTALGLSPVEAKKFPYIASMGIYLFKTDVLLKLLSFGF 259

Query: 321 ----------------PGANDFGSEVIPGA 334
                           P ANDFGSEVIP A
Sbjct: 260 NSLLLGALSISFLWSYPTANDFGSEVIPMA 289


>GSVIVT01023805001 assembled CDS
          Length = 517

 Score =  311 bits (796), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 149/250 (59%), Positives = 194/250 (77%), Gaps = 6/250 (2%)

Query: 91  RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNS 150
           ++V  IILGGGAGT+L+PLT ++A PAVP+G  YRLIDIP+SNC+NSNI+KI++LTQFNS
Sbjct: 83  KNVASIILGGGAGTQLFPLTIRQATPAVPVGGCYRLIDIPMSNCINSNINKIFILTQFNS 142

Query: 151 ASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENP--NWFQGTADAVRQYLWLFEE--- 205
           ASLNRH++R Y  N G    +GFVEVLAA Q+P      WF+GTADAVR+++W+FE+   
Sbjct: 143 ASLNRHIARTYFGN-GVNFGDGFVEVLAATQTPGEAGMKWFEGTADAVRKFIWVFEDAKN 201

Query: 206 HNVLEFLILAGDHLYRMDYERFIQAHRETDADITVAALPMDEARATAFGLMKIDEEGRIV 265
            N+   LIL+GDHLYRMDY   +Q H +  ADITV+ +P+ E+RA+ +GL+K+D  GRI+
Sbjct: 202 KNIENILILSGDHLYRMDYMDLVQNHIDRKADITVSCVPVGESRASDYGLLKMDNRGRII 261

Query: 266 EFAEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVVSKNAMLDLLRDRFPGAND 325
           +FAEKPKG  LKAMKVDTT LGL  + A + PYIASMG+YV   + +L+LLR R+P +ND
Sbjct: 262 QFAEKPKGADLKAMKVDTTRLGLSPQEAMKSPYIASMGVYVFKTDILLNLLRWRYPTSND 321

Query: 326 FGSEVIPGAT 335
           FGSE+IP A 
Sbjct: 322 FGSEIIPLAV 331


>GSVIVT01038262001 assembled CDS
          Length = 476

 Score =  268 bits (686), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 138/270 (51%), Positives = 185/270 (68%), Gaps = 16/270 (5%)

Query: 74  AVSDSKNSQ---TCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIP 130
            VS+S+ S+   +   P   +SV  I+ G G+ ++LYPLTK+R++ AV +  +YRLID  
Sbjct: 35  CVSNSQQSEHPASLSRPANRQSVAAIVFGDGSESQLYPLTKRRSEGAVHIAGSYRLIDAV 94

Query: 131 VSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQ 190
           VSNC+NSNI+KIY LTQFNS SLN HL RAY S +G       +EV+AA QSPE   WFQ
Sbjct: 95  VSNCINSNITKIYALTQFNSTSLNSHLCRAY-SGVG-------LEVVAAYQSPEARGWFQ 146

Query: 191 GTADAVRQYLWLFEEHNVLEFLILAGDHLYRMDYERFIQAHRETDADITVAALPMDEARA 250
           GTADAVR+ LWL EEH V EFL+L G HLYRMDY++ IQAHR++ ADIT+ AL  + +R 
Sbjct: 147 GTADAVRRCLWLVEEHPVAEFLVLPGYHLYRMDYQKLIQAHRQSKADITIVALSAEISRE 206

Query: 251 TAFGLMKIDEEGRIVEFAEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVVSKN 310
           T  G+++++ E ++VEF+++ + E   A  +  +  GL    ++   Y + MGIYVV K 
Sbjct: 207 TGLGILEVNSENQVVEFSKRSEKE--PATIISVSYFGLSSSLSQ---YFSGMGIYVVKKE 261

Query: 311 AMLDLLRDRFPGANDFGSEVIPGATSIGMR 340
            M+ LL + FP AN FGSEVIPGA SIGM+
Sbjct: 262 IMIKLLSEHFPKANGFGSEVIPGAISIGMK 291