Jatropha Genome Database

JcCA0008021.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0008021.30 - phase: 0 
         (157 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027575001 assembled CDS                                       190   2e-49

>GSVIVT01027575001 assembled CDS
          Length = 152

 Score =  190 bits (483), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 96/123 (78%), Positives = 101/123 (82%), Gaps = 2/123 (1%)

Query: 37  LEPIDREKTCPLLLRVFTKIGSHHKMEDFAVGGKEPKDEVQIYTWKDATLHELTDLVKEV 96
            EP+DREKTCPLLLRVFTKIG HH  EDFAV GKEPKDEVQIYTWKDATL ELTDLVKEV
Sbjct: 30  FEPVDREKTCPLLLRVFTKIGCHHSKEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEV 89

Query: 97  VPEARRQSARLSFAFVYPDIHGRFMLRVVGVTHS--NARRPYDAKALGELSFQIGDYLDV 154
            P ARR+ A LSFAFVYPD +GRF+LR VG T S  N +R  D KAL EL FQIGDYLDV
Sbjct: 90  APAARRRDAILSFAFVYPDTNGRFVLREVGKTFSYGNGKRLDDGKALAELGFQIGDYLDV 149

Query: 155 AIL 157
           AIL
Sbjct: 150 AIL 152