Jatropha Genome Database

JcCA0008021.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0008021.20 + phase: 0 
         (323 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019890001 assembled CDS                                       438   e-123
GSVIVT01024939001 assembled CDS                                        63   2e-10

>GSVIVT01019890001 assembled CDS
          Length = 326

 Score =  438 bits (1127), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/326 (68%), Positives = 252/326 (77%), Gaps = 3/326 (0%)

Query: 1   MASKLAISLTSS-GLSSAPIRKPVIXXXXXXXXXXX--XXXIQFNGRHFCVRRRIFMLPI 57
           MA+KL  +LT++  L ++  RKP+I                 Q  GR   + RR+F++  
Sbjct: 1   MATKLGFALTTAPRLFASSSRKPLISPASLSSASSCSRVESFQLVGRQLRLSRRLFIISP 60

Query: 58  KATAXXXXXXXXXXXXXSKILQYCSIDRKEKRSIGEMEQEFLQALQSFYYEGKAIMSNEE 117
           KATA             SKIL YCSID+KEKRSIGEMEQ+FLQALQSFYYEGKAIMSNEE
Sbjct: 61  KATADQQGQVQGDDVVDSKILPYCSIDKKEKRSIGEMEQDFLQALQSFYYEGKAIMSNEE 120

Query: 118 FDNLKEELMWEGSSVVMLSSDEQKFLEASMAYVSGKPILSDQEFDELKMRLKQEGSEIVV 177
           FDNLKEELMWEGSSVVMLSSDEQKFLEASMAYV+G PI+SD+EFD+LK++LK EGSEIVV
Sbjct: 121 FDNLKEELMWEGSSVVMLSSDEQKFLEASMAYVAGNPIMSDEEFDDLKIKLKIEGSEIVV 180

Query: 178 EGPRCSLRSRKVYSDLSVDYLKMFLLYVPATVVAXXXXXXXXXXXXXEITYLLELPEPFS 237
           EGPRCSLRS+KVYSDLSVDYLKMFLL VPA VVA             EIT+LLEL EPFS
Sbjct: 181 EGPRCSLRSKKVYSDLSVDYLKMFLLNVPAAVVALSLFFFLDDVTGFEITFLLELQEPFS 240

Query: 238 FIFTWFAAVPLIVWLAQSFTNAIVKDFLILKGPCPNCGTENLSFFGTILSVSSGGVTNMV 297
           FIFTWFAAVPLI WL+Q+ T  I+KDFLILKGPCPNCGTEN+SFFGTILS+S+GG TN +
Sbjct: 241 FIFTWFAAVPLIFWLSQTITKFILKDFLILKGPCPNCGTENVSFFGTILSISNGGTTNNL 300

Query: 298 KCSNCGTDMEYDSKTRLITLPEGSNA 323
           KCSNC T M YDSKTRLITLPEGS A
Sbjct: 301 KCSNCETQMVYDSKTRLITLPEGSEA 326


>GSVIVT01024939001 assembled CDS
          Length = 293

 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 86/202 (42%), Gaps = 28/202 (13%)

Query: 139 EQKFLEASMAYVSGKPILSDQEFDELKMRLKQEGSEIVVEGPRCSLRSRKVYSDLSVDYL 198
           E  + +A  AY SG+P++ D  FD ++++L+  GS+ V++ PRCSLR    Y+D   D  
Sbjct: 73  EALYCQARDAYYSGEPLIVDDMFDRVELKLRWYGSKSVLKYPRCSLRQHYTYADAEEDPS 132

Query: 199 KMFLL---------------YVPATVV---AXXXXXXXXXXXXXEITYLLELPEPFSFIF 240
           ++F L                VP       A             + + L  L      +F
Sbjct: 133 QVFALASIWILFLAFGGSACLVPIIYTVGQAYQDAFNSGLSYSSQASALQLLATANGILF 192

Query: 241 TWFAAVPLIVWLAQSFTNAIVK-----DFLILKGPCPNCGTENLSFFGTILSVSSGGVTN 295
               +V  I +   S +  +++     D + LKG CPNCG E  +F  +    SS    +
Sbjct: 193 MVLGSV--IGYPVASASVGVLQGLWRNDLVALKGACPNCGEEVFAFVKSGQPNSS---PH 247

Query: 296 MVKCSNCGTDMEYDSKTRLITL 317
              C  C + +E+ +K    TL
Sbjct: 248 SADCHVCESSLEFSTKVEQSTL 269