Jatropha Genome Database

JcCA0007981.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0007981.20 - phase: 0 
         (287 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01020002001 assembled CDS                                       423   e-119

>GSVIVT01020002001 assembled CDS
          Length = 288

 Score =  423 bits (1088), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 204/288 (70%), Positives = 239/288 (82%), Gaps = 1/288 (0%)

Query: 1   MDLSEIAKKLGLSESKNLIRKAAELRRLCDVQFDSSIIGVGEVSKAIICLEIAATRFQ-V 59
           MD+S+IAKKLGLS+SK++IRKAAELRRLCD+QFDSS+IGVGE+ KAIICLEIAA+R++ V
Sbjct: 1   MDISDIAKKLGLSDSKHIIRKAAELRRLCDIQFDSSVIGVGEICKAIICLEIAASRWEEV 60

Query: 60  IFDRQAAIRLSGLSEKAYTRSFNSLQNSLGVKTKLDIRELGIQFGCIRLIPLVKKGLSLY 119
           IFDR +AI+LSG+SEKAY RSFN++QN LGVKTKLDIRELGI+FGC+RLIP V+KGLSLY
Sbjct: 61  IFDRPSAIKLSGMSEKAYNRSFNAMQNGLGVKTKLDIRELGIRFGCVRLIPFVQKGLSLY 120

Query: 120 KERFLASLPATRRASADFTRPVFTAVAFYLCAXXXXXXXXXXXXXEVCGTSESEFKSVST 179
           K+RFLASLPA+RR SADFTRPVFTAVAFYLCA             E+CGTSESEF SVST
Sbjct: 121 KDRFLASLPASRRTSADFTRPVFTAVAFYLCAKRHKLKIDKLKLIELCGTSESEFSSVST 180

Query: 180 SMNDLCYDVFGISKEKKDPREVKGNRELLDVLPEKRKFEDGGYLSDDGAELSSYKKRKTA 239
           SM DLC+DVFGISKEKKDP++VKGNRELLD LP KRK +DGGY SDD  ELSSYK+RK  
Sbjct: 181 SMKDLCHDVFGISKEKKDPKDVKGNRELLDTLPGKRKLDDGGYSSDDALELSSYKRRKQK 240

Query: 240 EKVAYQEWXXXXXXXXXXXXXXGPCKQTRQTRLNFFKEVPETAGLEAL 287
           +K+AY+EW               P +QT+QT+L+F KEVPET  LEA+
Sbjct: 241 DKLAYEEWKSSVTAANKQSKAKVPSRQTKQTKLDFQKEVPETQKLEAM 288