Jatropha Genome Database

JcCA0007981.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0007981.10 - phase: 0 
         (258 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01020000001 assembled CDS                                       464   e-131
GSVIVT01013672001 assembled CDS                                       361   e-100
GSVIVT01016483001 assembled CDS                                        72   2e-13
GSVIVT01024874001 assembled CDS                                        70   8e-13
GSVIVT01006068001 assembled CDS                                        52   4e-07

>GSVIVT01020000001 assembled CDS
          Length = 258

 Score =  464 bits (1195), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 215/258 (83%), Positives = 239/258 (92%)

Query: 1   MGFQISDELLGTFAPIVVYWVYSGLYILLGFFDNYRLHTKQDEDEKNLVSKSTVFKGVLL 60
           MGF++SDELLG F PI+VYWVYSG+YI LG  +NYRLH+K++E++KNLVSK TV KGV+L
Sbjct: 1   MGFEVSDELLGAFVPILVYWVYSGIYIPLGSLENYRLHSKKEEEDKNLVSKGTVVKGVIL 60

Query: 61  QQSIQAVVAILLFTVTGNDSQADTYPQPSLIVLARQFVTAMLVMDTWQYFMHRYMHHNKF 120
           QQ IQAVVAILLFTVTG+DS A   P+PSLIVLARQF  AM V+DTWQYFMHRYMHHNKF
Sbjct: 61  QQVIQAVVAILLFTVTGDDSGAAAGPKPSLIVLARQFFIAMFVLDTWQYFMHRYMHHNKF 120

Query: 121 LYKHIHSQHHRLVVPYAFGALYNHPLEGLLLDTIGGALSFLMSGMSPRSSIFFFSFATIK 180
           LY+HIHSQHHRLVVPYAFGALYNHPLEGLLLDTIGGALSFL+SGMSPR+SIFFFSFATIK
Sbjct: 121 LYRHIHSQHHRLVVPYAFGALYNHPLEGLLLDTIGGALSFLLSGMSPRASIFFFSFATIK 180

Query: 181 TVDDHCGLWLPGNLFHVFFKNNTAYHDVHHQLYGSKYNFSQPFFVMWDRILGTYMPYSLE 240
           TVDDHCGLWLPGNLFH+FF+NN+AYHD+HHQLYGSKYNFSQPFFVMWD+ILGTYMPYSLE
Sbjct: 181 TVDDHCGLWLPGNLFHLFFRNNSAYHDIHHQLYGSKYNFSQPFFVMWDKILGTYMPYSLE 240

Query: 241 KKEGGGFEVRPTKECKDD 258
           K+ GGG E RPTKE KD+
Sbjct: 241 KRAGGGLEARPTKEFKDN 258


>GSVIVT01013672001 assembled CDS
          Length = 257

 Score =  361 bits (926), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 166/250 (66%), Positives = 204/250 (81%)

Query: 5   ISDELLGTFAPIVVYWVYSGLYILLGFFDNYRLHTKQDEDEKNLVSKSTVFKGVLLQQSI 64
           +SDE +GTFAPI+VYW+Y+G Y LL   DNYRLHT+++EDEKN V  ++V KGVLLQQ +
Sbjct: 8   VSDEAMGTFAPIIVYWLYAGFYQLLPPLDNYRLHTRKEEDEKNSVPLASVVKGVLLQQLV 67

Query: 65  QAVVAILLFTVTGNDSQADTYPQPSLIVLARQFVTAMLVMDTWQYFMHRYMHHNKFLYKH 124
           QA VA LLF +T     + T  QPS+ V   Q +  MLVMDTWQYF+HRYMH NKFLY+H
Sbjct: 68  QATVAHLLFVLTSKTGSSGTVIQPSIAVQIVQIIIGMLVMDTWQYFVHRYMHQNKFLYRH 127

Query: 125 IHSQHHRLVVPYAFGALYNHPLEGLLLDTIGGALSFLMSGMSPRSSIFFFSFATIKTVDD 184
           +HSQHH+LVVPYA GALYNHPLEGLLLDT+GGA+SFL+SGM+ R+++ FF FA IKTVDD
Sbjct: 128 VHSQHHKLVVPYAIGALYNHPLEGLLLDTVGGAISFLVSGMTARTAVIFFCFAVIKTVDD 187

Query: 185 HCGLWLPGNLFHVFFKNNTAYHDVHHQLYGSKYNFSQPFFVMWDRILGTYMPYSLEKKEG 244
           HCGLWLPGN+FH+ F+NNTAYHD+HHQ  G KYN+SQPFF +WD++LGT+MPY L ++  
Sbjct: 188 HCGLWLPGNIFHLLFQNNTAYHDIHHQRQGLKYNYSQPFFPIWDKLLGTHMPYKLVRRPQ 247

Query: 245 GGFEVRPTKE 254
           GGFE R TK+
Sbjct: 248 GGFEARLTKD 257


>GSVIVT01016483001 assembled CDS
          Length = 273

 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 101/232 (43%), Gaps = 12/232 (5%)

Query: 29  LGFFDNYRLHTKQDEDEKNLVSKSTVFKGVLLQQSIQAVVAILLFTVTGNDSQADTYPQP 88
           LG+   Y++ TK +           + + +L    +   V I  + V        + P P
Sbjct: 47  LGYLSKYKIQTKNNTPAAQ---NKCITRLLLYHFGVNLPVMIFSYPVFRYMGMQSSLPLP 103

Query: 89  SLIVLARQFVTAMLVMDTWQYFMHRYMHHNKFLYKHIHSQHHRLVVPYAFGALYNHPLEG 148
           S  V+  Q +   ++ D   Y+ HR +H  K+LYKH+HS HH    P+   + Y HP E 
Sbjct: 104 SWKVILTQILFYFILEDFVFYWGHRILH-TKWLYKHVHSIHHEYATPFGLTSEYAHPAEI 162

Query: 149 LLLDTIGGALSFLMSGMSPRSSIFFFSFATIKTVDDHCGLWLPGNLFH-VFFKNNTAYHD 207
           L L      L   ++G    +   +     ++TV+ HCG   P +L + +       +HD
Sbjct: 163 LFLG-FATILGPAITGPHLFTLWLWMVVRVLETVEAHCGYHFPFSLSNFIPLYGGANFHD 221

Query: 208 VHHQ-LYGSKYNFSQPFFVMWDRILGTYMPY----SLEKKEGGGFEVRPTKE 254
            HH+ LY    N+S  F  M D I GT   Y    +L++ E      + ++E
Sbjct: 222 YHHRVLYTKSGNYSSTFVYM-DWIFGTDKGYRKLQALKRYEAEASNNQTSRE 272


>GSVIVT01024874001 assembled CDS
          Length = 271

 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 90/208 (43%), Gaps = 12/208 (5%)

Query: 30  GFFDNYRLHTKQDEDEKNLVSKSTVFKGVLLQQSIQAVVAILLFTVTGNDSQADTYPQPS 89
           G+   Y++  K +        +  + + +L    +   V I  + +        + P PS
Sbjct: 48  GWLGKYKIQRKMNSSAAQ---ERCIMRLILYHFGVNLPVMIFSYPLFRYMGMQSSLPLPS 104

Query: 90  LIVLARQFVTAMLVMDTWQYFMHRYMHHNKFLYKHIHSQHHRLVVPYAFGALYNHPLEGL 149
             V+  Q +   ++ D   Y+ HR +H  K+LYKH+H  HH    P+   + Y HP E L
Sbjct: 105 WKVVLTQIIFYFILEDFVFYWGHRVLH-TKWLYKHVHCVHHEYATPFGLTSEYAHPAEIL 163

Query: 150 LLD--TIGGALSFLMSGMSPRSSIFFFSFATIKTVDDHCGLWLPGNLFHVF-FKNNTAYH 206
            L   TI G     ++G    +   +     ++TV+ HCG   P +L +         +H
Sbjct: 164 FLGFATIVGP---AITGPHLMTLWLWMVLRVLETVEAHCGYHFPWSLSNFLPLYGGADFH 220

Query: 207 DVHHQ-LYGSKYNFSQPFFVMWDRILGT 233
           D HH+ LY    N+S  F  M D I GT
Sbjct: 221 DYHHRLLYTKSGNYSSTFVYM-DWIFGT 247


>GSVIVT01006068001 assembled CDS
          Length = 221

 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 8/107 (7%)

Query: 84  TYPQPSLIVLARQFVTAMLVMDTWQYFMHRYMHHNKFLYKHIHSQHHRLVVPYAFGALYN 143
           + P PS   +  Q     +V D   Y++HR++H  K+ Y+ IH  HH    P  F A Y 
Sbjct: 117 SLPLPSGWEILMQLAVYFMVEDFTNYWIHRFLH-CKWGYEKIHRVHHEYTAPIGFAAPYA 175

Query: 144 HPLEGLLLDTIGGALSFLMSGMSPRSSIFFF---SFATIKTVDDHCG 187
           H  E L+L    G  SFL   M+P   I F+   +   I+ +D H G
Sbjct: 176 HWAEILIL----GIPSFLGPAMAPGHIITFWLWIALRQIEAIDTHSG 218