Jatropha Genome Database

JcCA0006671.80
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0006671.80 + phase: 0 
         (134 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01017084001 assembled CDS                                        72   8e-14
GSVIVT01010156001 assembled CDS                                        57   3e-09

>GSVIVT01017084001 assembled CDS
          Length = 404

 Score = 72.0 bits (175), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 55/115 (47%), Gaps = 6/115 (5%)

Query: 5   IFQGGSMRKLFLFLAIFCVLISLKNKNGKIENGKXXXXXXXXXXXXWDLYPSIFLSVEYE 64
           +F+  ++RKL   + + C+LISLKN N + +N                   SIF      
Sbjct: 8   VFETHTLRKLSFLVFLLCILISLKNHNAETKNSLQTARLPPPDSS------SIFSRRLSL 61

Query: 65  EKGANPYPSLEYDFYRDSCPQXXXXXXXXXXXXCKTQSNVAPALLRLAFHDCFIE 119
                   SLEYDFYR+SCP              + + NVAPALLRL FHDCFIE
Sbjct: 62  SANFGDSRSLEYDFYRNSCPPAEQIIRTMIRRLYEVRPNVAPALLRLVFHDCFIE 116


>GSVIVT01010156001 assembled CDS
          Length = 375

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 29/48 (60%)

Query: 72  PSLEYDFYRDSCPQXXXXXXXXXXXXCKTQSNVAPALLRLAFHDCFIE 119
           PSLEYDFYR+SCP+                S+  PALLRL FHDCFI+
Sbjct: 46  PSLEYDFYRNSCPKAESIVRSSMAQIFAAHSDTPPALLRLLFHDCFIQ 93