Jatropha Genome Database

JcCA0006671.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0006671.40 - phase: 0 
         (206 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015401001 assembled CDS                                       142   1e-34

>GSVIVT01015401001 assembled CDS
          Length = 218

 Score =  142 bits (358), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 71/154 (46%), Positives = 104/154 (67%), Gaps = 4/154 (2%)

Query: 55  IICLLF--IPALVYLLWPSDPNLRIVRLSLNKIHIHTLPIINIDVSLYVTIKVRNVDVYS 112
           + C +F  I A VYLL+PSDP +++V L LN + +HT P+I++D+SL +TI+VRN D +S
Sbjct: 45  LACAVFLSISAAVYLLYPSDPTVQVVGLHLNSVQVHTSPVISLDLSLDLTIRVRNRDFFS 104

Query: 113 MDLRRLDVALAYRGKRLGHVKVKGKGHVSALGSSYVDTELEFSGVRILSDVVFLLEDLAK 172
                L  ++ YRG+RLG V   G G++ A GSSY++  L+  G+ +L DV +LLEDLA+
Sbjct: 105 FSYTSLTASVGYRGRRLGFVNSSG-GYLRARGSSYINATLDLDGIEVLHDVFYLLEDLAR 163

Query: 173 GRVPFDTVIKVSGELGFLGLEFPFKV-IIFQVYI 205
           G +PFDTV +V G+LG    E P K  +  +VY+
Sbjct: 164 GSIPFDTVSEVRGKLGLFFFEIPLKARVSCEVYV 197