Jatropha Genome Database

JcCA0006661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0006661.10 + phase: 2 /TE/partial
         (1311 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018780001 assembled CDS                                       219   8e-57
GSVIVT01000901001 assembled CDS                                        68   2e-11
GSVIVT01012583001 assembled CDS                                        68   3e-11
GSVIVT01021619001 assembled CDS                                        57   8e-08

>GSVIVT01018780001 assembled CDS
          Length = 1567

 Score =  219 bits (558), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 114/287 (39%), Positives = 167/287 (58%), Gaps = 4/287 (1%)

Query: 567  NAPATFQRCMVSIFSDFVEEIIEVFMDDFTVYGNCFDECLTNLTKVLKRCIESNLVLNYE 626
            N PA F   M  +F  ++++ + VF+DD  +Y    +E   +L   L       L    +
Sbjct: 972  NVPAAFMDLMNRVFRAYLDQFVIVFVDDILIYSRSLEEHKQHLVTTLGTLRRHQLYGKLD 1031

Query: 627  KCHFMVDQGLILGHIVSSRGIEVDKAKIDVIKSLPYPASVREIRSFLGHAGFYRRFIKDF 686
            K  F + +   LGH+VS  GI VD +K++ ++    P +V E+RSFLG AG+YRRF++DF
Sbjct: 1032 KSEFWLTEVNFLGHVVSEAGIAVDHSKVEAVQEWQRPTNVFEVRSFLGLAGYYRRFVEDF 1091

Query: 687  SKIAQPLCKLLQKDVPFVFNGECREAFDMLKEKLISAPIVQPPNWNYPFEIMCDASNYAV 746
            S+IA P+ +L +K V F +N EC  AF  LK KL +AP++  P     F I CDAS   +
Sbjct: 1092 SRIAAPMTRLTRKGVKFDWNEECENAFQELKRKLTTAPVLTAPISGELFTIYCDASTVGL 1151

Query: 747  GAVLGQRIEKNPHVIYYASRTLDNAQCNYSTTEKELLAIVFALEKFRSYLLGTKVIVFSD 806
            G VL Q+ +    V+ YASR L   + NY   + EL A+VFAL+ +R YL G K  V+SD
Sbjct: 1152 GCVLMQQGK----VVAYASRQLKQHERNYPAHDLELAAVVFALKTWRHYLYGEKFEVYSD 1207

Query: 807  HAALRYLLKKKDSKPRLIRWILLLQEFDIEIRDKKGSENLVADHLSR 853
            H +L+Y+  +KD   R  RW+  L+++D  +  + G  N+VAD LSR
Sbjct: 1208 HKSLKYIFTQKDLNSRQRRWMETLEDYDFALHYQPGKANVVADALSR 1254


>GSVIVT01000901001 assembled CDS
          Length = 93

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/51 (58%), Positives = 40/51 (78%)

Query: 738 MCDASNYAVGAVLGQRIEKNPHVIYYASRTLDNAQCNYSTTEKELLAIVFA 788
           MCDAS++A+GAVL QR +  P+VIYYA + L+ AQ NY+T EKELL +V +
Sbjct: 1   MCDASDFAIGAVLRQREDGKPYVIYYARKALNEAQRNYTTIEKELLVVVVS 51


>GSVIVT01012583001 assembled CDS
          Length = 96

 Score = 68.2 bits (165), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 1/96 (1%)

Query: 1015 IDFMGPFPSSFGNS-YILLAVDYVSKWVEAKATRTDDAKTVVNFVKSHIFSRFGLPRAII 1073
            +D +GP P++     ++L+A DY SKWVEA+A      K +  F+  +I  RFG+P+ II
Sbjct: 1    MDIVGPLPTAGAQKKFLLIATDYFSKWVEAEAYANIKDKDITKFIWKNIIYRFGIPQEII 60

Query: 1074 SDRGTHFCNKIMENLFKKYGITHRVSTAYHPQTSGQ 1109
            +D G  F +   +  + +  I +  ST  +P+  G+
Sbjct: 61   ADNGLQFDSITFQTFYSELKIKNLYSTPRYPKAMGK 96


>GSVIVT01021619001 assembled CDS
          Length = 69

 Score = 56.6 bits (135), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/50 (52%), Positives = 34/50 (68%)

Query: 573 QRCMVSIFSDFVEEIIEVFMDDFTVYGNCFDECLTNLTKVLKRCIESNLV 622
            RC++SI SD VE  ++VFMDD  +Y   FD+CL NL +VLKR I   L+
Sbjct: 11  SRCLLSIISDMVERKMKVFMDDLKIYVKTFDDCLLNLKRVLKRRIAKFLI 60