Jatropha Genome Database

JcCA0006582.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0006582.10 + phase: 0 /partial
         (593 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003688001 assembled CDS                                       438   e-123

>GSVIVT01003688001 assembled CDS
          Length = 1203

 Score =  438 bits (1126), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/451 (50%), Positives = 295/451 (65%), Gaps = 4/451 (0%)

Query: 147 VLLHFVSTLPREFTDYGGSLREKMQEWLFG-GDKFYSSNNNSNQIKLLKSLQEFPERFTS 205
           V++ ++ T+P  + DY   L  K+ +WL G G K   ++  S ++ LL+S  +FP+RF S
Sbjct: 63  VVILYIFTMPCLWVDYEIFLMLKVHQWLLGCGKKHCDADCCSTKMMLLESFYDFPKRFIS 122

Query: 206 SQVFVDTFVSFDDEDLDAWESEAKRWARMLFLVIKGEDQLGPIFTFIRKYGVNICEEFNR 265
               VD FV++DDEDLDAW  EAKRW R+ FLVIK E  L PI  FI+ YG  I    N 
Sbjct: 123 CHQLVDAFVTYDDEDLDAWGYEAKRWTRVFFLVIKEEQDLVPILKFIQMYGTKIFRAINN 182

Query: 266 VGCSPVKFFVITINLVAEIQLMQEKALDNGIRIRNKPKVSLFETVDQLDCAEASIINGKX 325
           V    +KF + T++LV E+Q+MQE+  D  +++R K +    E+++QL  +EASI   K 
Sbjct: 183 VEWVTMKFLIFTLSLVQELQIMQERTADCSVKVRTKSEFGFAESINQLSSSEASIATEKF 242

Query: 326 XXXXXXXXXXXVNFACASCSIFLTSTA-RDTSLPSSVRGKLGGPSQRRLSSSTTTAVLEA 384
                      V +A  SCSIF +  A  D +LP S++GKLGGPSQRRL  ST+T+VL+A
Sbjct: 243 VNVFVYILEELVTYANLSCSIFWSGVATEDGNLPCSIKGKLGGPSQRRLPLSTSTSVLQA 302

Query: 385 ITSIRAVASIMSWCAQFTSDVHLKFAWTFMWQFFWKTVSSPTCGSENGAEICLAAYEALV 444
           I S++ VASI SWC Q  SD  L  A+ F+W+ FWK +S  TC SE GAEI LAAYEAL 
Sbjct: 303 IMSMKTVASISSWCVQLKSDASLNLAFNFLWKSFWKIISCTTCDSEIGAEIHLAAYEALA 362

Query: 445 PVLRSIASTFSPRAMDLIMENDKSS-TSAEGS-CLDQLVLSFLQNINNLLAVGVLVRTRR 502
           PVL+++ S FSP A+DLI ENDKS    AEG   LD LVL+FLQ+IN+LL  G L RTRR
Sbjct: 363 PVLKAVISVFSPLALDLIGENDKSMLQKAEGKPLLDSLVLTFLQDINSLLGFGALARTRR 422

Query: 503 AVLLNWKWLCLESLLSIPQTAVENGIHLEDNRSFFSDAVIRYIFSDLVESLENSGESSVL 562
           A+L+NWKW CLESLLSIP  A++NG+HLE   +FFSDA  R IFSDLVESLEN+GE SVL
Sbjct: 423 AILMNWKWHCLESLLSIPYYALKNGVHLEPCATFFSDAAARRIFSDLVESLENAGEGSVL 482

Query: 563 PMLRSIRXXXXXXXXXXXXXXXXXCNDVDSQ 593
           PMLRS+R                 C+ +D+Q
Sbjct: 483 PMLRSVRLALGLFTSRKLGSVVSSCHGMDAQ 513