Jatropha Genome Database

JcCA0003732.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0003732.20 + phase: 0 
         (273 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019802001 assembled CDS                                       369   e-103
GSVIVT01019026001 assembled CDS                                       196   9e-51

>GSVIVT01019802001 assembled CDS
          Length = 285

 Score =  369 bits (947), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/282 (68%), Positives = 216/282 (76%), Gaps = 15/282 (5%)

Query: 1   MALHEKLDRFKKQQEKCQSTLADIA---GPSKSTGAQKSIPAASTVTNTRTPGPPVKFSN 57
           MAL E L +FKKQQEKCQSTL  IA   G SK T  QK  PAA T   T      VKFSN
Sbjct: 1   MALQESLAKFKKQQEKCQSTLTSIAAKAGSSKPTVPQKFTPAAPTKPPTPA----VKFSN 56

Query: 58  DTERLQHINSIRKAPVGAQMKH--------KTAFTPEQINDACFVDVKSNKTVFDSLRNN 109
           DTERLQHINSIRKAPVGAQ+K         + AFTPEQIN+AC+VD  +NK VFDSLRNN
Sbjct: 57  DTERLQHINSIRKAPVGAQIKRVIDLLLETRQAFTPEQINEACYVDTNANKAVFDSLRNN 116

Query: 110 PKVNYDGRCFSYKSKHDLKDKNQLLSLICKFPEGIATIDLKDAYPAVTEDLQALKAAGKI 169
           PKV+YDG+ F+YKSKHDLKD++QLL L+ KFPEGIA IDLKD+YP+V EDLQALKAAG++
Sbjct: 117 PKVSYDGKRFAYKSKHDLKDRSQLLVLVRKFPEGIAVIDLKDSYPSVMEDLQALKAAGQV 176

Query: 170 WLLSNYDSQEDIAYPNDPRANIKVDDELKQLFRGVELAHDMLDIERDLIKNGMKPATDTA 229
           WLLSN+DSQEDIAYPNDPR  IKVDD+LKQ FR +EL  DMLDIE+DL KNGMKPAT+TA
Sbjct: 177 WLLSNFDSQEDIAYPNDPRVPIKVDDDLKQFFRTIELPRDMLDIEKDLQKNGMKPATNTA 236

Query: 230 KRRAAAQVQGIXXXXXXXXXXXXXXXRTKLTNAHLPELFRNL 271
           KRRA AQV GI               RTKLTNAHLPELF+NL
Sbjct: 237 KRRAMAQVHGIASKSKPKKKKHEISKRTKLTNAHLPELFQNL 278


>GSVIVT01019026001 assembled CDS
          Length = 178

 Score =  196 bits (498), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 106/158 (67%), Positives = 122/158 (77%), Gaps = 11/158 (6%)

Query: 1   MALHEKLDRFKKQQEKCQSTLADIAGPSKSTGAQKSIPA-ASTVTNTRTPGPPVKFSNDT 59
           MAL E L +FKKQQEKCQSTL  IA  +K+  ++ S+P   +    T+ P P VKFSNDT
Sbjct: 1   MALQESLAKFKKQQEKCQSTLTSIA--AKAVSSKPSVPQNFTPAAPTKPPTPAVKFSNDT 58

Query: 60  ERLQHINSIRKAPVGAQMKH--------KTAFTPEQINDACFVDVKSNKTVFDSLRNNPK 111
           ERLQHINSIRKAPVGAQ+K         + AFTPEQIN+AC+VD+ +NK VFDSLRNNPK
Sbjct: 59  ERLQHINSIRKAPVGAQIKRVIDLLLETRQAFTPEQINEACYVDMTANKAVFDSLRNNPK 118

Query: 112 VNYDGRCFSYKSKHDLKDKNQLLSLICKFPEGIATIDL 149
           VNYDG+ FSYKSKHDLKDK+QLL LI KFPEGIA IDL
Sbjct: 119 VNYDGKRFSYKSKHDLKDKSQLLVLIRKFPEGIAVIDL 156