Jatropha Genome Database

JcCA0003732.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0003732.10 + phase: 1 /pseudo/partial
         (434 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024559001 assembled CDS                                       140   1e-33
GSVIVT01030182001 assembled CDS                                       137   8e-33
GSVIVT01003212001 assembled CDS                                        94   1e-19

>GSVIVT01024559001 assembled CDS
          Length = 708

 Score =  140 bits (353), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 76/128 (59%), Positives = 94/128 (73%), Gaps = 8/128 (6%)

Query: 2   FSRIDPGGKLVMGFRKATNNSLDTQDAQTSTIPNSAAITEASFSGIVTS-ENHGGRVNGD 60
           FSRIDPG KLV+G RKA+N  +D QDAQTS + N      +SFS +  +     G++N D
Sbjct: 381 FSRIDPGNKLVIGCRKASN-CVDVQDAQTSALSNGTIYGGSSFSSVTENLSTCAGKMNED 439

Query: 61  A----LLQPTSEKKRTRNIGPKNKRLLMNSEDALELRLTWEEAQDLLRPPPSVKPSIVAI 116
           +    LL P  EKKRTRNIG KNKRLLM+SEDALEL++TW+E QD+LRPPPSV+P+IV I
Sbjct: 440 SPQQSLLIP--EKKRTRNIGSKNKRLLMHSEDALELKITWQETQDILRPPPSVEPNIVTI 497

Query: 117 EDHEFEEY 124
           E +E EEY
Sbjct: 498 EGYEIEEY 505


>GSVIVT01030182001 assembled CDS
          Length = 856

 Score =  137 bits (346), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 81/168 (48%), Positives = 96/168 (57%), Gaps = 46/168 (27%)

Query: 1   TFSRIDPGGKLVMGFRKATNNSLDTQDAQTSTIPNSAAITEASFSGIV------------ 48
           TFSR+DP GKLVMGFRKA+N S+  QD Q S IPN A  +E  FSG++            
Sbjct: 390 TFSRMDPEGKLVMGFRKASN-SVSMQDTQLSAIPNGAHSSETFFSGVIENQPIISGYSGI 448

Query: 49  -----------------------------TSENHGGRVNGDALLQPT---SEKKRTRNIG 76
                                         +E HGG+   + LL P+    EKKRTR IG
Sbjct: 449 LQSLKGSTDPHLNALSKHLNSASGDIGWHKTEKHGGKTR-EGLLLPSMLVPEKKRTRTIG 507

Query: 77  PKNKRLLMNSEDALELRLTWEEAQDLLRPPPSVKPSIVAIEDHEFEEY 124
            K+KRLL++ +DALELRLTWEEAQ LLRPPPSVKP I  IED+EFE Y
Sbjct: 508 SKSKRLLIDGQDALELRLTWEEAQSLLRPPPSVKPVIDVIEDYEFEAY 555


>GSVIVT01003212001 assembled CDS
          Length = 601

 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/138 (39%), Positives = 78/138 (56%), Gaps = 20/138 (14%)

Query: 1   TFSRIDPGGKLVMGFRKATNNSLDTQDAQTSTIPN-------------SAAITEASFSGI 47
           TFSR++P GKLVMGFRKA+      Q  +T    N             ++A ++   SG 
Sbjct: 413 TFSRLEPEGKLVMGFRKASTAPSSDQGNETIKTGNGGSTHGDADLADPASAWSKVDKSGY 472

Query: 48  VTSENHGGRVNGDALLQPTSEKKRTRNIGPKNKRLLMNSEDALELRLTWEEAQDLLRPPP 107
           +  E  G + +          K++   +G K+KRL + +ED +EL+LTWEEAQ LLRPP 
Sbjct: 473 IAKEALGAKSS-------IPRKRKNSTLGSKSKRLRIENEDLIELKLTWEEAQGLLRPPL 525

Query: 108 SVKPSIVAIEDHEFEEYD 125
           +  P++V IE +EFEEY+
Sbjct: 526 NHVPNVVVIEGYEFEEYE 543