Jatropha Genome Database

JcCA0003592.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0003592.10 + phase: 1 /partial
         (98 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013175001 assembled CDS                                       133   2e-32
GSVIVT01015819001 assembled CDS                                       114   9e-27
GSVIVT01012063001 assembled CDS                                       109   3e-25

>GSVIVT01013175001 assembled CDS
          Length = 165

 Score =  133 bits (334), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/74 (89%), Positives = 69/74 (93%)

Query: 25  AVESVKATSDVNSPISGEIVEVNSKLSEAPGAINSSPYEEGWMIKVKPSNPSELGSLLDA 84
           AVESVKATSDVNSPISGE+VEVNSKLSEAPG INSSPYE+GWMIKVKPSNPSEL SL+  
Sbjct: 92  AVESVKATSDVNSPISGEVVEVNSKLSEAPGLINSSPYEDGWMIKVKPSNPSELESLMGP 151

Query: 85  KAYTKFCEEEDAAH 98
           K YTKFCEEEDAAH
Sbjct: 152 KEYTKFCEEEDAAH 165


>GSVIVT01015819001 assembled CDS
          Length = 155

 Score =  114 bits (285), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 52/74 (70%), Positives = 66/74 (89%)

Query: 25  AVESVKATSDVNSPISGEIVEVNSKLSEAPGAINSSPYEEGWMIKVKPSNPSELGSLLDA 84
           AVESVKATSD+NSP+SG++VEVN +LS +PG +N SPYE+GW+IKV+ SNPSEL SL+D+
Sbjct: 82  AVESVKATSDINSPVSGKVVEVNEELSSSPGLVNGSPYEKGWIIKVEISNPSELNSLMDS 141

Query: 85  KAYTKFCEEEDAAH 98
           + Y+KFCEEEDA H
Sbjct: 142 EQYSKFCEEEDAKH 155


>GSVIVT01012063001 assembled CDS
          Length = 154

 Score =  109 bits (272), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 49/74 (66%), Positives = 64/74 (86%)

Query: 25  AVESVKATSDVNSPISGEIVEVNSKLSEAPGAINSSPYEEGWMIKVKPSNPSELGSLLDA 84
           AVESVKATSD+NSP+SG++VEVN +L+ +PG +N+SPYE GW+IKV+ S+  EL SL+D+
Sbjct: 81  AVESVKATSDINSPVSGKVVEVNEELNSSPGLVNASPYENGWIIKVEMSDTGELNSLMDS 140

Query: 85  KAYTKFCEEEDAAH 98
           + YTKFCEEEDA H
Sbjct: 141 EQYTKFCEEEDAKH 154