Jatropha Genome Database

JcCA0003212.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0003212.20 - phase: 0 
         (151 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027637001 assembled CDS                                       298   5e-82
GSVIVT01018537001 assembled CDS                                       295   4e-81

>GSVIVT01027637001 assembled CDS
          Length = 151

 Score =  298 bits (764), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 144/151 (95%), Positives = 151/151 (100%)

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISAQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGIS+SALPYKRTPPSWLKIS+QDVE+NICKFAKKG+TPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGMTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
           AQV+SVTG+KILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
           RIHRLARYYK+TKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKRTKKLPPVWKYESTTASTLVA 151


>GSVIVT01018537001 assembled CDS
          Length = 151

 Score =  295 bits (756), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 142/151 (94%), Positives = 149/151 (98%)

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISAQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGIS+SALPYKRTPP+WLKIS+QDVEDNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPTWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
           AQV+SVTG+KILR+LK HGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRVLKGHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
           RIHRL RYYK+TKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLGRYYKRTKKLPPVWKYESTTASTLVA 151