Jatropha Genome Database

JcCA0003212.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0003212.10 - phase: 0 
         (619 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027677001 assembled CDS                                       478   e-135
GSVIVT01027679001 assembled CDS                                       384   e-107
GSVIVT01027678001 assembled CDS                                       381   e-106

>GSVIVT01027677001 assembled CDS
          Length = 388

 Score =  478 bits (1230), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 236/361 (65%), Positives = 268/361 (74%), Gaps = 48/361 (13%)

Query: 305 FFWLVLELRNNSAIQGSQKKRNNKSDHLVLGPAAGQGLPNRLQCQGSRALNKTHLLNPSS 364
           +F  VLEL  +S I+GSQKK + K DHLVLGPAAGQGL +RLQCQG++ALNKTH+   S 
Sbjct: 22  YFLSVLELHQSSTIEGSQKKHSKKFDHLVLGPAAGQGLHDRLQCQGTKALNKTHIATSSH 81

Query: 365 ASNVGESVAFVTVFTIYNTSLDSHADSRSSNLVTVGNVSYSKTQRSMAILNIFINFIQT- 423
            SN GES+A +TVFTIYN+SL  HAD RSS+LVTVGN SYSK +RSMAILN+FINFIQ  
Sbjct: 82  ESNFGESIALITVFTIYNSSLALHADGRSSDLVTVGNASYSKMERSMAILNVFINFIQAT 141

Query: 424 -----------------------------------------------FLNTRLNGLAQHP 436
                                                          FL T+L   +Q  
Sbjct: 142 MPQSNVIILTDPASEFSLHRDRVTIYPIQGEYSRDKLMLQRIRSYIVFLETKLEEHSQGH 201

Query: 437 QHKNHYIFTDSDIAVVDDLKHIFHKFPNFHLALTFRNNKDQPLNSGFIAVRGTPESILRA 496
            H NHYIFTDSDIAVVDDL  IF   PNFH+ALTFRNNK+QPLNSGFIAVRGTP+ ILRA
Sbjct: 202 GHINHYIFTDSDIAVVDDLGQIFQSHPNFHVALTFRNNKEQPLNSGFIAVRGTPDGILRA 261

Query: 497 KIFLEEVLEVYTSKYMNASRMLGDQLALAWIIKSHPSFDLRRFRKAQAFVEEVGGASVLF 556
           K+FL+EVL+VY+S++MNASRMLGDQLALAW++KSHP FD +RF K QAF+E++GG SVLF
Sbjct: 262 KLFLQEVLKVYSSRFMNASRMLGDQLALAWVVKSHPYFDTKRFSKPQAFLEDIGGTSVLF 321

Query: 557 LPCATYNWTPPEGAGQFRGMPLDVKVVHFKGSRKRLMLESWNFFSSTSDISDMLCLILTS 616
           LPCA YNWTPPEGAGQF GMPLDVKVVHFKGSRKRLMLESWNFF S+SDISDMLCLIL S
Sbjct: 322 LPCAIYNWTPPEGAGQFHGMPLDVKVVHFKGSRKRLMLESWNFFISSSDISDMLCLILMS 381

Query: 617 G 617
           G
Sbjct: 382 G 382


>GSVIVT01027679001 assembled CDS
          Length = 297

 Score =  384 bits (987), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 179/209 (85%), Positives = 203/209 (97%)

Query: 85  KDKIDALGRLLTRVLRHMASELSLNMRSDGYVKVQDLLKLNMKTFADIPLRAHTVDDIKE 144
           KDKIDALGRLLTR+LRHMASEL+LNMRSDGY++V+DLLKLNMKTFA+IPLR+HT+DDI+E
Sbjct: 89  KDKIDALGRLLTRILRHMASELNLNMRSDGYIRVEDLLKLNMKTFANIPLRSHTIDDIRE 148

Query: 145 AVRKDNKQRFSLLEENGELLIRANQGHTIKAVESESLLKPILSADEVPVCVHGTYKKNVE 204
           AVRKDNKQRFSLLEENGELLIRANQGHT+  VESESLLKPILSA+EV VCVHG+YK+N+E
Sbjct: 149 AVRKDNKQRFSLLEENGELLIRANQGHTVTIVESESLLKPILSAEEVTVCVHGSYKRNLE 208

Query: 205 SILNSGLKRMQRLHVHFSCGLPTDGEVISGMRRDVNVLVYLNVKKALEEGMKLYISDNRV 264
           SIL SGLKRM+RLHVHFSCGLP DGEVISGMRRDVN+L++L+V+KALE+GMKLYISDN+V
Sbjct: 209 SILESGLKRMKRLHVHFSCGLPMDGEVISGMRRDVNLLIFLDVRKALEDGMKLYISDNKV 268

Query: 265 ILTEGFDGVVPVKYFEKIESWPERRPIPF 293
           ILTEGFDGVVPVKYFEKIESWP+R+ IPF
Sbjct: 269 ILTEGFDGVVPVKYFEKIESWPDRQTIPF 297


>GSVIVT01027678001 assembled CDS
          Length = 301

 Score =  381 bits (978), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 179/209 (85%), Positives = 201/209 (96%)

Query: 85  KDKIDALGRLLTRVLRHMASELSLNMRSDGYVKVQDLLKLNMKTFADIPLRAHTVDDIKE 144
           KDKIDALGRLLTR+LRHMASEL+LNMRSDGYV+VQDLLKLNMKTFA+IPLR+HT+DDI+E
Sbjct: 93  KDKIDALGRLLTRILRHMASELNLNMRSDGYVRVQDLLKLNMKTFANIPLRSHTIDDIRE 152

Query: 145 AVRKDNKQRFSLLEENGELLIRANQGHTIKAVESESLLKPILSADEVPVCVHGTYKKNVE 204
           AVRKDNKQRF LLEENGELLIRANQGHT+  VESESLLKPILSA+EV VCVHG+YK+N+E
Sbjct: 153 AVRKDNKQRFGLLEENGELLIRANQGHTVTIVESESLLKPILSAEEVTVCVHGSYKRNLE 212

Query: 205 SILNSGLKRMQRLHVHFSCGLPTDGEVISGMRRDVNVLVYLNVKKALEEGMKLYISDNRV 264
           SIL SGLK M+RLHVHFSCGLP DGEVISGMRRDVN+L++L+V+KALE+GMKLYISDN+V
Sbjct: 213 SILESGLKHMKRLHVHFSCGLPMDGEVISGMRRDVNLLIFLDVRKALEDGMKLYISDNKV 272

Query: 265 ILTEGFDGVVPVKYFEKIESWPERRPIPF 293
           ILTEGFDGVVPVKYFEKIESWP+R+ IPF
Sbjct: 273 ILTEGFDGVVPVKYFEKIESWPDRQTIPF 301