Jatropha Genome Database

JcCA0002951.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0002951.10 + phase: 0 
         (249 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016927001 assembled CDS                                       358   1e-99
GSVIVT01016925001 assembled CDS                                        50   1e-06

>GSVIVT01016927001 assembled CDS
          Length = 226

 Score =  358 bits (919), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 175/226 (77%), Positives = 187/226 (82%), Gaps = 1/226 (0%)

Query: 25  MTGICFRDQLWLNTYPLDRNLIFDYFALSPFYDWTCNNEQLRLQSIHPLDLSHLSKMTGM 84
           MTGICFRDQLWLN+YPLDRNL+FDYFALSPFYDWTCNNEQLRL+SIHPLD SHLSKMTG 
Sbjct: 1   MTGICFRDQLWLNSYPLDRNLVFDYFALSPFYDWTCNNEQLRLRSIHPLDTSHLSKMTGT 60

Query: 85  EYMLSEVMEPNLFVIRKQKRDSPEKVTPMLTYYILDGSIYQAPQLCNVFAARIGRALYYI 144
           EYML+EVMEP+LFVIRKQKRD PEKVTPMLTYYILDGSIYQAPQLCNVF ARIGRALY+I
Sbjct: 61  EYMLNEVMEPHLFVIRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFTARIGRALYHI 120

Query: 145 SKAFTNAASKLEKIGYVD-EGEGVTSESKVGKELIDFKEVKRIDSILASLQRKLXXXXXX 203
           SKAFT AASKLEKIGYVD E E    ESKVGKE IDFKEV R+D ILASLQRKL      
Sbjct: 121 SKAFTTAASKLEKIGYVDAENENPALESKVGKETIDFKEVMRVDQILASLQRKLPPAPPP 180

Query: 204 XXXXXXXXXXXSTDTEKGAESQQGTESQPLAVDPIIDQGPAKRMKF 249
                      + + EKG E+QQ  E Q  A+DPIIDQGP+KRMKF
Sbjct: 181 PQFPEGYAPPPTAEGEKGPETQQAAEPQLPALDPIIDQGPSKRMKF 226


>GSVIVT01016925001 assembled CDS
          Length = 1479

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 26/39 (66%)

Query: 9   SFEGNXXXXXXXXGTDMTGICFRDQLWLNTYPLDRNLIF 47
           +F+GN        GT+MTGICF+DQLWLN+YP     +F
Sbjct: 385 NFDGNPPVAPTPLGTNMTGICFKDQLWLNSYPNSNEHMF 423