Jatropha Genome Database

JcCA0000872.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0000872.20 + phase: 0 
         (529 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01029984001 assembled CDS                                       659   0.0  

>GSVIVT01029984001 assembled CDS
          Length = 450

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/422 (82%), Positives = 382/422 (90%)

Query: 108 QSVSGILHLLVSLGIILAMDKLLKKAFVAAAIKFPSALFGMFCIFSVLLILDSTIPAAAT 167
           QSV G+LHL+VSLGIILAMDKLLKKAFVAAAIKFPSALFGMFCIF++L+ILDST+PAAA 
Sbjct: 29  QSVFGVLHLVVSLGIILAMDKLLKKAFVAAAIKFPSALFGMFCIFTILVILDSTVPAAAK 88

Query: 168 SLVNFFEPALLFIQRWXXXXXXXXXXXXXXXXRDIPAASGLKICYIVAGGWLASLCVAGF 227
           SL+NFF+PALLFIQRW                +DIPAASGLKIC+I+ GGWLASL VAG+
Sbjct: 89  SLINFFQPALLFIQRWLPLFYVPSLVVLPLAVKDIPAASGLKICFIIVGGWLASLSVAGY 148

Query: 228 TAITVRKIVKTEMTDAEPMKKPSPFSPLEVWAWSGIFLVSFVAALWFPTALGTSARTCLP 287
           TAI VRKIVKTEM  AEPM+KPSPF+ +EVW W+GIFL+SFV+AL +PT LGT+ARTCLP
Sbjct: 149 TAIAVRKIVKTEMIPAEPMEKPSPFTSIEVWTWTGIFLISFVSALLYPTLLGTNARTCLP 208

Query: 288 FLLASTVLGYMVGSGLPSSVKKAFHPIICCTLSADLAALAFGYLSHSGLNPVLGYYLTKV 347
           FLLASTVLGY+VGSG PS+VKK FHPIICC LSADLAALAFGY S SGL PVLGYYLTK 
Sbjct: 209 FLLASTVLGYVVGSGFPSTVKKVFHPIICCALSADLAALAFGYFSQSGLYPVLGYYLTKA 268

Query: 348 SADPGAGDVLMGFLGSVILSFAFSMFKQRKLVKRHAAEIFTSVIFSTIFSLYSTALIGRL 407
           S++PGAGD+LMGFLGSVILSFAFSMFKQRKLVKRHAAEIFTS+I STIFSLYSTA IGR+
Sbjct: 269 SSNPGAGDILMGFLGSVILSFAFSMFKQRKLVKRHAAEIFTSIIISTIFSLYSTAFIGRI 328

Query: 408 VGLEPTLTVSILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANFVQFALDKLKF 467
           +GLE  LTVSILPRCITVALALSIVSLFEGANSSLTAAVVV+TGL+GANFVQ  LDKLKF
Sbjct: 329 LGLEQDLTVSILPRCITVALALSIVSLFEGANSSLTAAVVVLTGLVGANFVQAVLDKLKF 388

Query: 468 RDPIARGIATASSAHGLGTAALSAKEPEALPFCAIAYALTGIFGSLICSVPAVRQSLLAI 527
           RDPIARGIATASSAHGLGTAALSAKEPEALPFCAIAYALTGIFGSL+CSVPAVRQSLLAI
Sbjct: 389 RDPIARGIATASSAHGLGTAALSAKEPEALPFCAIAYALTGIFGSLLCSVPAVRQSLLAI 448

Query: 528 IG 529
           +G
Sbjct: 449 VG 450