Jatropha Genome Database

JcCA0000872.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0000872.10 + phase: 2 /TE/partial
         (819 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018780001 assembled CDS                                        81   2e-15

>GSVIVT01018780001 assembled CDS
          Length = 1567

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 5/198 (2%)

Query: 287  LGFIVGPKGTTIYLDKIKAIQEMKSPKIEMQVKSFLGKIQYINMLISKLSIVCDPIFKLL 346
            LG +V   G  +   K++A+QE + P    +V+SFLG   Y    +   S +  P+ +L 
Sbjct: 1043 LGHVVSEAGIAVDHSKVEAVQEWQRPTNVFEVRSFLGLAGYYRRFVEDFSRIAAPMTRLT 1102

Query: 347  KKDQPVKWNDHYHIAFDKIKNYFSSPPILCSPKLGNLLILYLIVEDVEIGTILAXVDRAT 406
            +K     WN+    AF ++K   ++ P+L +P  G L  +Y     V +G +L       
Sbjct: 1103 RKGVKFDWNEECENAFQELKRKLTTAPVLTAPISGELFTIYCDASTVGLGCVL-----MQ 1157

Query: 407  SEKTIYFXXXXXXXXXXXXXXIERTCLAMVWATRKLSHYFQSYKVITVSRMDSVKYLYGT 466
              K + +               +    A+V+A +   HY    K    S   S+KY++  
Sbjct: 1158 QGKVVAYASRQLKQHERNYPAHDLELAAVVFALKTWRHYLYGEKFEVYSDHKSLKYIFTQ 1217

Query: 467  PSLVGKLTRWLIMLFEFD 484
              L  +  RW+  L ++D
Sbjct: 1218 KDLNSRQRRWMETLEDYD 1235