Jatropha Genome Database

JcCA0000831.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0000831.30 + phase: 0 
         (502 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008378001 assembled CDS                                       615   e-176
GSVIVT01011797001 assembled CDS                                       614   e-176
GSVIVT01006210001 assembled CDS                                       276   2e-74
GSVIVT01029546001 assembled CDS                                       116   3e-26
GSVIVT01035538001 assembled CDS                                       115   5e-26
GSVIVT01023982001 assembled CDS                                       110   1e-24
GSVIVT01008750001 assembled CDS                                       109   2e-24
GSVIVT01033373001 assembled CDS                                        97   1e-20
GSVIVT01029711001 assembled CDS                                        84   1e-16

>GSVIVT01008378001 assembled CDS
          Length = 419

 Score =  615 bits (1586), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 302/413 (73%), Positives = 347/413 (84%), Gaps = 1/413 (0%)

Query: 79  MSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDDLGPVDTRATSPIHRSAPA 138
           M  T+GL RG  V++TG+P++VPVG ATLGRI NV+GEP+D+ G + T    PIHR AP+
Sbjct: 1   MDGTEGLVRGQRVLNTGSPITVPVGRATLGRIINVIGEPIDERGDIKTDHFLPIHREAPS 60

Query: 139 FIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSV 198
           F+   T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAHGG SV
Sbjct: 61  FVDQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSV 120

Query: 199 FGGVGERTREGNDLYMEMKESGVIN-QENIAESKVALVYGQMNEPPGARMRVGLTALTMA 257
           F GVGERTREGNDLY EM ESGVI   E  +ESK ALVYGQMNEPPGAR RVGLT LT+A
Sbjct: 121 FAGVGERTREGNDLYREMIESGVIKLGEKQSESKCALVYGQMNEPPGARARVGLTGLTVA 180

Query: 258 EYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTK 317
           E+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G LQERIT+TK
Sbjct: 181 EHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTK 240

Query: 318 EGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQP 377
           +GSITS+QA+YVPADDLTDPAPATTFAHLDATTVLSR ++  GIYPAVDPLDSTS ML P
Sbjct: 241 KGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSP 300

Query: 378 QIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFV 437
            I+GEEHY TA+ V++ LQ YK LQDIIAILG+DELSE+D+LTVARARKI+RFLSQPF V
Sbjct: 301 HILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHV 360

Query: 438 AEVFTGSPGKYVGLAETIRGFKLILSGELDSLPEQAFYLVGNIDEATAKATNL 490
           AEVFTG+PGKYV L E+I  F+ +L G+ D L EQ+FY+VG I+E  AKA  +
Sbjct: 361 AEVFTGAPGKYVELKESITSFQGVLDGKYDDLSEQSFYMVGGIEEVIAKAEKI 413


>GSVIVT01011797001 assembled CDS
          Length = 419

 Score =  614 bits (1583), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 301/413 (72%), Positives = 347/413 (84%), Gaps = 1/413 (0%)

Query: 79  MSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDDLGPVDTRATSPIHRSAPA 138
           M  T+GL RG  V++TG+P++VPVG ATLGRI NV+GEP+D+ G + T    PIHR AP+
Sbjct: 1   MDGTEGLVRGQRVLNTGSPITVPVGRATLGRIINVIGEPIDERGEIKTDHFLPIHREAPS 60

Query: 139 FIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSV 198
           F+   T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAHGG SV
Sbjct: 61  FVDQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSV 120

Query: 199 FGGVGERTREGNDLYMEMKESGVIN-QENIAESKVALVYGQMNEPPGARMRVGLTALTMA 257
           F GVGERTREGNDLY EM ESGVI   +  +ESK ALVYGQMNEPPGAR RVGLT LT+A
Sbjct: 121 FAGVGERTREGNDLYREMIESGVIKLGDKQSESKCALVYGQMNEPPGARARVGLTGLTVA 180

Query: 258 EYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTK 317
           E+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G LQERIT+TK
Sbjct: 181 EHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTK 240

Query: 318 EGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQP 377
           +GSITS+QA+YVPADDLTDPAPATTFAHLDATTVLSR ++  GIYPAVDPLDSTS ML P
Sbjct: 241 KGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSP 300

Query: 378 QIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFV 437
            I+GEEHY TA+ V++ LQ YK LQDIIAILG+DELSE+D+LTVARARKI+RFLSQPF V
Sbjct: 301 HILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHV 360

Query: 438 AEVFTGSPGKYVGLAETIRGFKLILSGELDSLPEQAFYLVGNIDEATAKATNL 490
           AEVFTG+PGKYV L E+I  F+ +L G+ D L EQ+FY+VG I+E  AKA  +
Sbjct: 361 AEVFTGAPGKYVELKESITSFQGVLDGKYDDLSEQSFYMVGGIEEVIAKAEKI 413


>GSVIVT01006210001 assembled CDS
          Length = 216

 Score =  276 bits (705), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 143/181 (79%), Positives = 147/181 (81%), Gaps = 18/181 (9%)

Query: 1   MRINPTTSGPGVPALEKKNLGRIAQIIGPVLDVAFSPGKMPNIYNALVVKGRDTVGQEIN 60
           MRINPTTSGP V  LEKKNLGRIAQIIGP+LDVAF PGKMPNIYNALVVKGRDTVGQ+IN
Sbjct: 1   MRINPTTSGPRVSTLEKKNLGRIAQIIGPILDVAFPPGKMPNIYNALVVKGRDTVGQQIN 60

Query: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDD 120
           VTCEVQQLLGNNRVRAVAMSATD                  VGGATLGRIFNVLGE VD+
Sbjct: 61  VTCEVQQLLGNNRVRAVAMSATD------------------VGGATLGRIFNVLGELVDN 102

Query: 121 LGPVDTRATSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTV 180
           LGPVDTR TSPIHRSAPAFIQLDTK SIFETGI+VVDLLAPYR GGKI L G AG     
Sbjct: 103 LGPVDTRTTSPIHRSAPAFIQLDTKFSIFETGIQVVDLLAPYRLGGKIELLGLAGWKDCF 162

Query: 181 L 181
           L
Sbjct: 163 L 163


>GSVIVT01029546001 assembled CDS
          Length = 623

 Score =  116 bits (290), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 151/324 (46%), Gaps = 21/324 (6%)

Query: 129 TSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINN 188
           T P+    P   +L     +  TG +V+D L P   GG   + G  G GKTV+   L   
Sbjct: 210 TWPVRTPRPVASKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY 268

Query: 189 IAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINQENIAES---KVALVYGQMNEPPGA 245
              ++    V+ G GER  E  ++ M+  +  +   +   ES   +  LV    N P  A
Sbjct: 269 ---SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAA 325

Query: 246 RMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTE 305
           R     T +T+AEYFRD+   +V +  D+  R+ +A  E+S  L  MP+  GY   L+  
Sbjct: 326 REASIYTGITIAEYFRDMG-YNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAAR 384

Query: 306 MGSLQERITSTK-------EGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAA 358
           + S  ER    K        GS+T + AV  P  D +DP  + T + +     L + LA 
Sbjct: 385 LASFYERAGKVKCLGGPERNGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQ 444

Query: 359 KGIYPAVDPLDSTSTMLQPQIVGEEHYE-----TAQRVKQTLQRYKELQDIIAILGLDEL 413
           +  +P+V+ L S S          E Y+        + ++ LQR  +L +I+ ++G D L
Sbjct: 445 RKHFPSVNWLISYSKYATALESFYEQYDPDFINIRTKAREVLQREDDLNEIVQLVGKDAL 504

Query: 414 SEEDRLTVARARKI-ERFLSQPFF 436
           +E D++T+  A+ + E +L+Q  F
Sbjct: 505 AETDKITLETAKLLREDYLAQNAF 528


>GSVIVT01035538001 assembled CDS
          Length = 623

 Score =  115 bits (288), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 151/324 (46%), Gaps = 21/324 (6%)

Query: 129 TSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINN 188
           T P+    P   +L     +  TG +V+D L P   GG   + G  G GKTV+   L   
Sbjct: 210 TWPVRTPRPVASKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSK- 267

Query: 189 IAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINQENIAES---KVALVYGQMNEPPGA 245
              ++    V+ G GER  E  ++ M+  +  +   +   ES   +  LV    N P  A
Sbjct: 268 --YSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAA 325

Query: 246 RMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTE 305
           R     T +T+AEYFRD+   +V +  D+  R+ +A  E+S  L  MP+  GY   L+  
Sbjct: 326 REASIYTGITIAEYFRDMG-YNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAAR 384

Query: 306 MGSLQERITSTK-------EGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAA 358
           + S  ER    K        GS+T + AV  P  D +DP  + T + +     L + LA 
Sbjct: 385 LASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQ 444

Query: 359 KGIYPAVDPLDSTSTMLQPQIVGEEHYE-----TAQRVKQTLQRYKELQDIIAILGLDEL 413
           +  +P+V+ L S S          E Y+        + ++ LQR  +L +I+ ++G D L
Sbjct: 445 RKHFPSVNWLISYSKYSTALESFYEQYDPDFINIRTKAREVLQREDDLNEIVQLVGKDAL 504

Query: 414 SEEDRLTVARARKI-ERFLSQPFF 436
           +E D++T+  A+ + E +L+Q  F
Sbjct: 505 AETDKITLETAKLLREDYLAQNAF 528


>GSVIVT01023982001 assembled CDS
          Length = 488

 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 103/360 (28%), Positives = 166/360 (46%), Gaps = 25/360 (6%)

Query: 94  TGAPLSVPVGGATLGRIFNVLGEPVDDLGPVDTRATSPIHRSAPAFIQLDTKLSIFETGI 153
           TG  L  PV    LGRIFN  G+P+D+  P+   A   I  S+    +      + +TGI
Sbjct: 89  TGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGI 148

Query: 154 KVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVF---GGVGERTREGN 210
             +D++    RG KI LF  AG+       E+   I +  G V      G + E   E N
Sbjct: 149 STIDVMNSIARGQKIPLFSAAGLPHN----EIAAQICRQAGLVKRLEKSGSLLEDVEEDN 204

Query: 211 ------DLYMEMKESGVIN---QENIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFR 261
                  + + M+ +       +EN +  +V L     N+P   R+     ALT AEY  
Sbjct: 205 FAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLA 264

Query: 262 DVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERI--TSTKEG 319
               + VL+ + ++  +  A  EVSA    +P   GY   + T++ ++ ER      ++G
Sbjct: 265 YECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKG 324

Query: 320 SITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPQI 379
           SIT I  + +P DD+T P P  T    +    + R L  + IYP ++ L S S +++  I
Sbjct: 325 SITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAI 384

Query: 380 VGE-----EHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIER-FLSQ 433
            GE     +H + + ++       K++Q + A++G + LS ED L +    K ER F++Q
Sbjct: 385 -GEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQ 443


>GSVIVT01008750001 assembled CDS
          Length = 503

 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 166/366 (45%), Gaps = 37/366 (10%)

Query: 94  TGAPLSVPVGGATLGRIFNVLGEPVDDLGPVDTRATSPIHRSAPAFIQLDTKLSIFETGI 153
           TG  L  PV    LGRIFN  G+P+D+  P+   A   I  S+    +      + +TGI
Sbjct: 104 TGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGI 163

Query: 154 KVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLY 213
             +D++    RG KI LF  AG+       E+   I +  G V          + GN L 
Sbjct: 164 STIDVMNSIARGQKIPLFSAAGLPHN----EIAAQICRQAGLVKRL------EKSGNLLE 213

Query: 214 MEMKESGVI------------------NQENIAESKVALVYGQMNEPPGARMRVGLTALT 255
            E++++  I                   +EN +  +V L     N+P   R+     ALT
Sbjct: 214 DEVEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALT 273

Query: 256 MAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERI-- 313
            AEY      + VL+ + ++  +  A  EVSA    +P   GY   + T++ ++ ER   
Sbjct: 274 TAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGR 333

Query: 314 TSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTST 373
              ++GSIT I  + +P DD+T P P  T    +    + R L  + IYP ++ L S S 
Sbjct: 334 IEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSR 393

Query: 374 MLQPQIVGE-----EHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIE 428
           +++  I GE     +H + + ++       K++Q + A++G + LS ED L +    K E
Sbjct: 394 LMKSAI-GEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFE 452

Query: 429 R-FLSQ 433
           R F++Q
Sbjct: 453 RKFVAQ 458


>GSVIVT01033373001 assembled CDS
          Length = 67

 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/65 (69%), Positives = 54/65 (83%)

Query: 23 IAQIIGPVLDVAFSPGKMPNIYNALVVKGRDTVGQEINVTCEVQQLLGNNRVRAVAMSAT 82
          + QIIG +L+V F P  MPNIYNALVVKG+DT+ Q+IN+TC VQQLLGNNR+R VAMS+T
Sbjct: 1  MVQIIGLILNVTFPPITMPNIYNALVVKGQDTINQQINMTCIVQQLLGNNRIRVVAMSST 60

Query: 83 DGLTR 87
           GL R
Sbjct: 61 YGLMR 65


>GSVIVT01029711001 assembled CDS
          Length = 84

 Score = 84.3 bits (207), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/62 (66%), Positives = 49/62 (79%)

Query: 431 LSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDSLPEQAFYLVGNIDEATAKATNL 490
           LSQP F+ EVFT S GKYVGLA+TIRGF+LI+  EL    ++AFYLVGNID+AT K+ N 
Sbjct: 17  LSQPLFMIEVFTSSLGKYVGLAKTIRGFRLIIFKELGYFLKKAFYLVGNIDKATTKSINF 76

Query: 491 EL 492
           EL
Sbjct: 77  EL 78