Jatropha Genome Database

JcCA0000831.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0000831.20 - phase: 0 
         (475 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022403001 assembled CDS                                       195   3e-50
GSVIVT01013856001 assembled CDS                                       184   7e-47

>GSVIVT01022403001 assembled CDS
          Length = 99

 Score =  195 bits (496), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 91/94 (96%), Positives = 93/94 (98%)

Query: 212 MRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMIKRAVFARELGVPIVMHDYLT 271
           MRW DRFLFCAEAI+K+QAETGEIKGHYLNATAGTCEEMIKRAVFARELGVPIVMHDYLT
Sbjct: 1   MRWIDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMIKRAVFARELGVPIVMHDYLT 60

Query: 272 GGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQK 305
           GGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQK
Sbjct: 61  GGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQK 94


>GSVIVT01013856001 assembled CDS
          Length = 116

 Score =  184 bits (467), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 97/145 (66%), Positives = 100/145 (68%), Gaps = 35/145 (24%)

Query: 331 VVGKLEGERDITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPVASGGIHVWHMPAL 390
           +VGKLE ER+ITLGFVDLLRDDF+EKDRS GIYFTQDWV LP VL VASG IHVWHMP L
Sbjct: 7   LVGKLEEEREITLGFVDLLRDDFVEKDRSHGIYFTQDWVFLPSVLLVASGSIHVWHMPTL 66

Query: 391 TEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNEIIREASK 450
           TEIFGDD                                    GRDLAREGNEIIR ASK
Sbjct: 67  TEIFGDDF-----------------------------------GRDLAREGNEIIRAASK 91

Query: 451 WSPELAAACEVWKEIKFEFQAMDTL 475
           WSPELAAACEVWKEIKFEF AMDTL
Sbjct: 92  WSPELAAACEVWKEIKFEFPAMDTL 116