Jatropha Genome Database

JcCA0000831.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0000831.10 + phase: 2 /partial
         (119 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015297001 assembled CDS                                       209   2e-55
GSVIVT01016971001 assembled CDS                                       184   6e-48
GSVIVT01009899001 assembled CDS                                       152   4e-38
GSVIVT01031551001 assembled CDS                                       132   3e-32
GSVIVT01002667001 assembled CDS                                       104   9e-24

>GSVIVT01015297001 assembled CDS
          Length = 436

 Score =  209 bits (533), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 100/117 (85%), Positives = 108/117 (92%)

Query: 1   DEKGLFYALDLGGTNFRVIRVLLGGREDRVVKQEFEEVSIPPHLMTGSSDALFDYIAEAL 60
           DEKGLFYALDLGGTNFRV+RV LGG++ RVVKQEFEEVSIPPHLM GSSDALFDYIA AL
Sbjct: 31  DEKGLFYALDLGGTNFRVLRVQLGGKDKRVVKQEFEEVSIPPHLMVGSSDALFDYIAAAL 90

Query: 61  AKFVATEGEGLHPSPGQQRELGFTFSFPVRQTSIASGTLIKWTKGFSIEDTVNPDFL 117
           AKFVATEGEGLH SPG+QRELGFTFSFPVRQ+SI+SG+LIKWTKGFSIED V  D +
Sbjct: 91  AKFVATEGEGLHVSPGRQRELGFTFSFPVRQSSISSGSLIKWTKGFSIEDAVGQDVV 147


>GSVIVT01016971001 assembled CDS
          Length = 448

 Score =  184 bits (468), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 89/117 (76%), Positives = 98/117 (83%)

Query: 1   DEKGLFYALDLGGTNFRVIRVLLGGREDRVVKQEFEEVSIPPHLMTGSSDALFDYIAEAL 60
           DEKGLFYALDLGGTNFRV+RV LGGR+ R+V QEF EVSIPP+LM  S+DALFDYIA  L
Sbjct: 31  DEKGLFYALDLGGTNFRVLRVQLGGRDGRIVNQEFVEVSIPPNLMVKSTDALFDYIATEL 90

Query: 61  AKFVATEGEGLHPSPGQQRELGFTFSFPVRQTSIASGTLIKWTKGFSIEDTVNPDFL 117
           AKFVA EG G H  PG+QRELGFTFSFPV QTSI SG LIKWTKGFSI+DT+  D +
Sbjct: 91  AKFVAKEGPGFHLPPGRQRELGFTFSFPVMQTSINSGNLIKWTKGFSIDDTIGRDVV 147


>GSVIVT01009899001 assembled CDS
          Length = 411

 Score =  152 bits (383), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 71/117 (60%), Positives = 90/117 (76%)

Query: 1   DEKGLFYALDLGGTNFRVIRVLLGGREDRVVKQEFEEVSIPPHLMTGSSDALFDYIAEAL 60
           +EKGLFYALDLGGTNFRV+RV LGG+++RV+  EFE+V+IP  LM G+S+ LFD+IA  L
Sbjct: 13  NEKGLFYALDLGGTNFRVLRVQLGGKDERVIATEFEQVTIPQELMFGTSEELFDFIACGL 72

Query: 61  AKFVATEGEGLHPSPGQQRELGFTFSFPVRQTSIASGTLIKWTKGFSIEDTVNPDFL 117
           A F   EG   H   G++RE+GFTFSFPV+QTSI SG L+KWTKGF++  T   D +
Sbjct: 73  ANFAKKEGGKFHLPSGRKREIGFTFSFPVKQTSIDSGILMKWTKGFAVSGTAGRDVV 129


>GSVIVT01031551001 assembled CDS
          Length = 523

 Score =  132 bits (333), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 62/114 (54%), Positives = 84/114 (73%)

Query: 2   EKGLFYALDLGGTNFRVIRVLLGGREDRVVKQEFEEVSIPPHLMTGSSDALFDYIAEALA 61
           E+G +YALDLGGTNFRV+++ LGG+   ++  + E   IP  LMT +S+ LFD+IA +L 
Sbjct: 93  ERGKYYALDLGGTNFRVLQIQLGGKTSSILSCDVERQPIPQDLMTSTSEDLFDFIASSLK 152

Query: 62  KFVATEGEGLHPSPGQQRELGFTFSFPVRQTSIASGTLIKWTKGFSIEDTVNPD 115
           +FV  E +    SP ++RELGFTFSFPV+QTS++SG LIKWTK FS++D V  D
Sbjct: 153 QFVEREAQNSEFSPVKRRELGFTFSFPVKQTSVSSGILIKWTKRFSVKDMVGKD 206


>GSVIVT01002667001 assembled CDS
          Length = 479

 Score =  104 bits (259), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 51/112 (45%), Positives = 74/112 (66%), Gaps = 1/112 (0%)

Query: 1   DEKGLFYALDLGGTNFRVIRVLLGGREDRVVKQEFEEVSIPPHLMTGSSDALFDYIAEAL 60
           DE+GL+Y L+L G+NF ++R  L G+ + + +   EEVSIP ++M G+S  LFDYIA  L
Sbjct: 78  DEEGLYYGLNLRGSNFLILRARLRGKNESISELHREEVSIPSNVMGGTSQELFDYIALEL 137

Query: 61  AKFVATEGEGLHPSPGQQRELGFTFSFPVRQTSIASGTLIKWTKGFSIEDTV 112
           AKF++        +P +Q+ LGF  S+PV Q + +SG  IKW + FS+ DTV
Sbjct: 138 AKFISEHEVTTDDTPDRQKALGFIVSYPVDQAAASSGAAIKW-RSFSVTDTV 188