Jatropha Genome Database

JcCA0000182.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0000182.20 + phase: 2 /TE
         (660 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012583001 assembled CDS                                        82   8e-16
GSVIVT01032526001 assembled CDS                                        67   2e-11
GSVIVT01020170001 assembled CDS                                        60   3e-09

>GSVIVT01012583001 assembled CDS
          Length = 96

 Score = 82.0 bits (201), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 36/96 (37%), Positives = 61/96 (63%), Gaps = 2/96 (2%)

Query: 379 IDIIGKITPAASNGHQYILVAVDYFSRWIEAQSYKTLTAKHMARFIEQNIFCRYGVPHHI 438
           +DI+G + P A    +++L+A DYFS+W+EA++Y  +  K + +FI +NI  R+G+P  I
Sbjct: 1   MDIVGPL-PTAGAQKKFLLIATDYFSKWVEAEAYANIKDKDITKFIWKNIIYRFGIPQEI 59

Query: 439 VTDNGSHFQADVGQLLY-RYKVEHHHSSPYRPQANG 473
           + DNG  F +   Q  Y   K+++ +S+P  P+A G
Sbjct: 60  IADNGLQFDSITFQTFYSELKIKNLYSTPRYPKAMG 95


>GSVIVT01032526001 assembled CDS
          Length = 287

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 60/127 (47%), Gaps = 2/127 (1%)

Query: 82  AWKLYFDGSANRN--GAGASIVIEAPNGEVTIMCKRLLFPITNNMAEYEACIMGMEALLA 139
           +W L FDG++  N   AGA  V+ A +G   I  +  +   TNN+AEY A I+GM+  L 
Sbjct: 147 SWLLQFDGASKGNPGQAGAGAVLRADDGSAVIHLREGVGIATNNVAEYRALILGMKYALK 206

Query: 140 SGAKEVEVIGDSLLVIEHANERWKVEEERLKPYVEYLLKKAALFDKITFTHIGRIHNRIP 199
            G K +   GDS LV       WK + + +    E   +    F      H+ R  N   
Sbjct: 207 KGIKRIRARGDSQLVCMQFQGLWKTKNQNMADLCEEAKELGKKFLSFQIEHVLREFNSEA 266

Query: 200 NALANLA 206
           +A ANLA
Sbjct: 267 DAQANLA 273


>GSVIVT01020170001 assembled CDS
          Length = 445

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 2/128 (1%)

Query: 81  RAWKLYFDGSA--NRNGAGASIVIEAPNGEVTIMCKRLLFPITNNMAEYEACIMGMEALL 138
           R+  + FDG++  N   AGA+ V+ + +G V    +  L   TNN+AEY+A I+G++  L
Sbjct: 289 RSCVVEFDGASKGNPGPAGAAAVLRSDSGRVICRVREGLGLATNNVAEYQAMILGLKYAL 348

Query: 139 ASGAKEVEVIGDSLLVIEHANERWKVEEERLKPYVEYLLKKAALFDKITFTHIGRIHNRI 198
             G   + V GDS LV       WK   + +    +   K    F  +   H+ R  N  
Sbjct: 349 KKGYTSIRVQGDSKLVCMQVQGLWKARNKNMSILCKEAKKLKNEFLSVEINHVLRGLNSE 408

Query: 199 PNALANLA 206
            +A ANLA
Sbjct: 409 ADAQANLA 416