Jatropha Genome Database

JcCA0000051.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0000051.40 - phase: 0 /partial
         (176 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01038218001 assembled CDS                                       123   4e-29
GSVIVT01014552001 assembled CDS                                        48   3e-06

>GSVIVT01038218001 assembled CDS
          Length = 204

 Score =  123 bits (309), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 66/123 (53%), Positives = 81/123 (65%), Gaps = 4/123 (3%)

Query: 35  MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAK-EGKSATLKLPSGEVRLISKNCSATVG 93
           M +GT IHNIEI  G+GG+L RAAG  AKL+ +   +   +++PSG  +LI   C AT+G
Sbjct: 68  MRIGTIIHNIEINPGQGGKLVRAAGTSAKLLKEPTSRYVLVRMPSGVQKLIDTRCRATIG 127

Query: 94  QVGNTGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIG---RKKPATPW 150
            V N G   K L +AG   WLG+RPVVRGV MNPVDHPHGGGEGR+  G    +   TPW
Sbjct: 128 TVSNPGHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSGGSHGRGSLTPW 187

Query: 151 GYP 153
           G P
Sbjct: 188 GKP 190


>GSVIVT01014552001 assembled CDS
          Length = 136

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 34  DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSAT 91
            +P G  + N+E  +G  G  ARA+G  A +++    + T  +KLPSG  ++I   C A 
Sbjct: 25  SIPEGAVVCNVEHHVGDRGVFARASGDYAIVVSHNPDNGTSRIKLPSGAKKIIPSGCRAM 84

Query: 92  VGQVGNTGVNQKSLGRAGS 110
           VGQV   G  +K + +AG+
Sbjct: 85  VGQVAGGGRTEKPMLKAGN 103