Jatropha Genome Database

JcCA0000041.60
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0000041.60 + phase: 0 /partial
         (188 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01029875001 assembled CDS                                       272   7e-74
GSVIVT01030620001 assembled CDS                                       183   5e-47
GSVIVT01017636001 assembled CDS                                       160   3e-40
GSVIVT01037398001 assembled CDS                                        72   2e-13
GSVIVT01032240001 assembled CDS                                        46   1e-05

>GSVIVT01029875001 assembled CDS
          Length = 224

 Score =  272 bits (696), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 148/187 (79%), Positives = 156/187 (83%), Gaps = 8/187 (4%)

Query: 2   KRKAFIPLLYLTSIVFLPWWISFFSFLFNKSFESWVINWCNTSKSETFLNDIQEKSILEK 61
           K+KAF PLLYL SI FLPWWIS      NKS ESWV NW NT +S+TFLNDIQEK     
Sbjct: 3   KKKAFTPLLYLASIAFLPWWISLS---LNKSLESWVTNWWNTRQSKTFLNDIQEK----- 54

Query: 62  FIELEELVRLDEMIKEYPETHLQGFRTGIHKETIQLIKMHNEDRIHTILHFSTNIICFVI 121
           FIELEEL  LDEMIKE PETHLQ    GIHKETIQLIK++NED IHTILHFS NIICFVI
Sbjct: 55  FIELEELFLLDEMIKECPETHLQKLLLGIHKETIQLIKIYNEDPIHTILHFSKNIICFVI 114

Query: 122 LSGYSILSNEELIILNSWVQEFLYNLSDTIKAFSILLLTDLCIGFHSPHGWELMIGSVYK 181
           LSGYSIL NEEL+ILNSW+Q+FLYNL DTIKAFSILLLTDLCIGFHSPH WEL IGSVYK
Sbjct: 115 LSGYSILGNEELLILNSWIQQFLYNLGDTIKAFSILLLTDLCIGFHSPHVWELTIGSVYK 174

Query: 182 DFGFAHN 188
           DFGFAHN
Sbjct: 175 DFGFAHN 181


>GSVIVT01030620001 assembled CDS
          Length = 132

 Score =  183 bits (464), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 103/127 (81%), Positives = 107/127 (84%), Gaps = 3/127 (2%)

Query: 2   KRKAFIPLLYLTSIVFLPWWISFFSFLFNKSFESWVINWCNTSKSETFLNDIQEKSILEK 61
           K+KAF PLLYL SIVFLPWWIS      NKS ESWV NW NT +SETFLNDIQEKSILEK
Sbjct: 3   KKKAFTPLLYLASIVFLPWWISLS---LNKSLESWVTNWWNTRQSETFLNDIQEKSILEK 59

Query: 62  FIELEELVRLDEMIKEYPETHLQGFRTGIHKETIQLIKMHNEDRIHTILHFSTNIICFVI 121
           FIELEEL  LDEMIKE PETHLQ  R GIHKE IQLIKM+NED IHTILHFSTNIICFVI
Sbjct: 60  FIELEELFLLDEMIKECPETHLQKLRMGIHKEMIQLIKMYNEDPIHTILHFSTNIICFVI 119

Query: 122 LSGYSIL 128
           LSGYSI+
Sbjct: 120 LSGYSIM 126


>GSVIVT01017636001 assembled CDS
          Length = 121

 Score =  160 bits (405), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 99/154 (64%), Positives = 105/154 (68%), Gaps = 39/154 (25%)

Query: 2   KRKAFIPLLYLTSIVFLPWWISFFSFLFNKSFESWVINWCNTSKSETFLNDIQEKSILEK 61
           K+KAF PLLYL SIVF                                        ILEK
Sbjct: 3   KKKAFTPLLYLASIVFF---------------------------------------ILEK 23

Query: 62  FIELEELVRLDEMIKEYPETHLQGFRTGIHKETIQLIKMHNEDRIHTILHFSTNIICFVI 121
           FIELEEL  LDEMIKE PET+LQ  R GIHKETIQLIKM+NED IHTILHFSTNIICFVI
Sbjct: 24  FIELEELFLLDEMIKECPETNLQKLRMGIHKETIQLIKMYNEDPIHTILHFSTNIICFVI 83

Query: 122 LSGYSILSNEELIILNSWVQEFLYNLSDTIKAFS 155
           LSGYSILSNEEL+ILNSW+Q+FLYNLSDTIKAFS
Sbjct: 84  LSGYSILSNEELLILNSWIQQFLYNLSDTIKAFS 117


>GSVIVT01037398001 assembled CDS
          Length = 100

 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/37 (86%), Positives = 33/37 (89%)

Query: 152 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFAHN 188
           K+F   LLTDL IGFHSPHGWELMIGSVYKDFGFAHN
Sbjct: 20  KSFFYSLLTDLSIGFHSPHGWELMIGSVYKDFGFAHN 56


>GSVIVT01032240001 assembled CDS
          Length = 415

 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 16/77 (20%)

Query: 109 ILHFSTNIICFVILSGYSILSNEELIILNSWVQEFLYNLSDTIKAFSILLLTDLCIGFHS 168
           +L+F+ + +  +  +GY I++N                +SDT KAF I+L+TD+ +G+HS
Sbjct: 308 LLYFNQSQVALLKFTGYKIINN----------------ISDTGKAFLIILITDIFLGYHS 351

Query: 169 PHGWELMIGSVYKDFGF 185
             GW+ ++  V + +G 
Sbjct: 352 ESGWQTLLEVVVEHYGL 368