Jatropha Genome Database

JcCA0000041.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0000041.30 + phase: 0 
         (493 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010035001 assembled CDS                                       160   1e-39
GSVIVT01033348001 assembled CDS                                        56   4e-08

>GSVIVT01010035001 assembled CDS
          Length = 994

 Score =  160 bits (406), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 86/159 (54%), Positives = 100/159 (62%), Gaps = 39/159 (24%)

Query: 335 MGSVVGEKITRLIEYATNKFLPLILVCASGGARMQEGSLSLMQMAKISSALYDYQSNKKL 394
           MGSVVGEKITRLIEYATN+FLPLILV + GGA MQEG L   +++               
Sbjct: 1   MGSVVGEKITRLIEYATNEFLPLILVRSFGGAHMQEGILVCWEIS--------------- 45

Query: 395 FYVSILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGKRVIEQTLNKTVPEGSQSAEFLF 454
                                   ++  P +YIAFAGKRV+EQTL KT+PEGSQ AE+LF
Sbjct: 46  ------------------------LLPNPISYIAFAGKRVVEQTLKKTIPEGSQVAEYLF 81

Query: 455 HKGLFDPIVPRNPLKGVLNELLQLHDFFPLNHKSSRALS 493
           HKGLFDPIVPRN LKGVL+ L QLH FFPLN K   ++S
Sbjct: 82  HKGLFDPIVPRNTLKGVLSGLFQLHAFFPLNKKKKSSIS 120


>GSVIVT01033348001 assembled CDS
          Length = 784

 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 38/53 (71%), Gaps = 3/53 (5%)

Query: 63  VDHLVGIR---NFSVDETFLVRDSNRDSYSIYFDIENQVFEIETDHSFLNELE 112
           +DHL  ++   NF  ++TFLVRD N  +Y IYFDIEN +FEI+ + SF +ELE
Sbjct: 593 IDHLFDVKDIWNFISNDTFLVRDKNVVNYFIYFDIENSMFEIDNNQSFQSELE 645