Jatropha Genome Database

JcCA0000015.50
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0000015.50 - phase: 0 /TE
         (957 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01004252001 assembled CDS                                        96   8e-20
GSVIVT01003599001 assembled CDS                                        83   6e-16
GSVIVT01037358001 assembled CDS                                        73   6e-13
GSVIVT01004123001 assembled CDS                                        65   2e-10
GSVIVT01004860001 assembled CDS                                        54   3e-07
GSVIVT01001301001 assembled CDS                                        53   6e-07
GSVIVT01032339001 assembled CDS                                        53   9e-07

>GSVIVT01004252001 assembled CDS
          Length = 533

 Score = 95.9 bits (237), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 160/372 (43%), Gaps = 33/372 (8%)

Query: 380 YLGLPSLIGRERRHIFSFLKDXVRKLVSGWNQKLLSKAGKEVLIKAVAQAIPSFCMSSFL 439
           YLGLP     +   ++  ++  +RK ++ W ++ LSK G+  LIK+   ++P + +S F 
Sbjct: 32  YLGLPLGAKHKAMAMWDGVEARMRKRLALWKRQYLSKGGRITLIKSTLASLPIYQLSFFR 91

Query: 440 ISVSILVELQRLMNSYWWGG-----KMRWLSWERLCVAKEEXGLGFRHLRSFNLALLGKR 494
           +   ++  L++L   + WGG     K+  ++WE +C  KE  GLG R +   N ALLGK 
Sbjct: 92  MPKLVVKRLEKLQRDFLWGGGSMERKIHLINWEVVCTQKESGGLGIRKIDLLNKALLGKW 151

Query: 495 YWRFLHNTN-------SLXXXXXXXXXXPSRNFLSAGVGRDPSFVWRGICAAKDAICSGF 547
            WRF    N        +                + GVG     VWR I           
Sbjct: 152 IWRFAFEENFFWRKVVGVKYGQLGFGWRTKEARGTFGVG-----VWRDILKDSSWCWDNI 206

Query: 548 RWRIEDGQSINVWTKPWLLRD--NEFWVHLPILPGFEHIRVSDLILTH-GARAWNLPLIH 604
            +++  G  ++ WT  W   +  ++ +  L  L    +  V+++  +  G   WN+ L  
Sbjct: 207 EFKVGKGTKVSFWTDHWCGNEVLSQAFPQLFALAVQRNASVNEMWDSSLGQGGWNIRLSR 266

Query: 605 GLFNPSIVEIITSI-----PLATNVQDDILIWHWTDSGIYSMKSGHRIVASLYVDIEDAW 659
             FN   ++ +  +      L  ++++D +IW     G + ++  +++++   V      
Sbjct: 267 N-FNDWELDALGELLHLLRDLRISLEEDAVIWKEEGRGRFRIRDAYKLLSGSNVITFPK- 324

Query: 660 RSSFWKALWSMKIPPKVRHFLWRCCRDILLVKATLARMGLELDTGCDYYGTTETLV-RAL 718
                K++W  K+P KV  F W    + +L    L R G +L   C   G  E  V   L
Sbjct: 325 -----KSIWVDKVPTKVAFFAWEASWEKVLTLDKLQRRGWQLPNRCFLCGCEEENVNHIL 379

Query: 719 VECPRVSFCWQL 730
           + C  V   W++
Sbjct: 380 LHCTVVRALWEI 391


>GSVIVT01003599001 assembled CDS
          Length = 801

 Score = 83.2 bits (204), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 38/68 (55%), Positives = 47/68 (69%)

Query: 329 MKNILVTYEAASGQAVNRQKSDIFFSSNTSELNKNAVKGIFGVIAPLNYGRYLGLPSLIG 388
           M  I   YE+ SGQA+N QKS IFFS N S L+++ +  I GV  PLN GRYLGLPSLIG
Sbjct: 1   MHTIFAKYESNSGQAINFQKSGIFFSRNVSSLDRDFISNILGVSTPLNTGRYLGLPSLIG 60

Query: 389 RERRHIFS 396
           + +R +F 
Sbjct: 61  KSKRAVFE 68


>GSVIVT01037358001 assembled CDS
          Length = 2456

 Score = 73.2 bits (178), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 127/296 (42%), Gaps = 34/296 (11%)

Query: 408  GWNQKLLSKAGKEVLIKAVAQAIPSFCMSSFLISVSILVELQRLMNSYWWGG-----KMR 462
            GW +  LS  G+  LI++    +P + +S F I  S++ +++RL   + W G     +  
Sbjct: 857  GWQKAYLSFGGRITLIQSCLTHMPCYFLSLFKIPTSVVAKIERLQRDFLWSGIEEGKRNH 916

Query: 463  WLSWERLCVAKEEXGLGFRHLRSFNLALLGKRYWRFLHNTNSLXXXXXXXXXXPSRNFLS 522
             +SW+ +C  K + GLGF  +   NLALLGK  WR+L   ++L             N   
Sbjct: 917  LVSWDVVCNPKAKGGLGFGKISLRNLALLGKWLWRYLREGSALWHQVILSIYGSHSNGWD 976

Query: 523  AGV-----GRDPSFVWRGICAAKDAICSGFRWRIEDGQSINVWTKPWLLRDNEFWVHLPI 577
            A        R P   W+ I           R+ + +G+ I +W   W   D       P 
Sbjct: 977  ANTLVRWSHRCP---WKAIAQVFQEFSMFTRFVVGNGERILLWEDLW-WGDQSLGSQYPR 1032

Query: 578  LPGF---EHIRVSDLILTHGARAWNLPLIHGLFNPSIVEI---------ITSIPLATNVQ 625
            L      ++I +S ++ +    +WN      L +  I ++         +   P  +N +
Sbjct: 1033 LFRVVMDKNIPISLILGSTHPFSWNFNFHRNLSDSEIEDLEGLMRSLDGLHQSPSVSNAR 1092

Query: 626  DDILIWHWTDSGIYSMKSGHRIVASLYVDIEDAWRSSFWKALWSMKIPPKVRHFLW 681
                 W  + SG++S+KS  R ++     +   + S F   +W+ ++P KV+ F+W
Sbjct: 1093 ----FWPLSYSGLFSIKSFFRALSQFSGSLP-VFPSKF---VWNSQVPFKVKSFVW 1140


>GSVIVT01004123001 assembled CDS
          Length = 386

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 121/284 (42%), Gaps = 31/284 (10%)

Query: 419 KEVLIKAVAQAIPSFCMSSFLISVSILVELQRLMNSYWWGG-----KMRWLSWERLCVAK 473
           +  LI++    +P + MS   +   +   L+++   + WGG     K   + WE +C++K
Sbjct: 74  RTTLIRSTLSNLPIYLMSLLCLPSVVRRRLEKIQRDFLWGGGNLERKPHLVRWEVVCLSK 133

Query: 474 EEXGLGFRHLRSFNLALLGKRYWRFLHNTNSLXXXXXXXXXXPSRNFLSAGVGRDPS--F 531
           ++ GLG ++L   N ALL K  WRF +   +L            R   S+   R+     
Sbjct: 134 KKGGLGVKNLSILNKALLAKWNWRFANEREALWNQVIRGKYGEERGGWSSREVREAHGLG 193

Query: 532 VWRGICAAKDAICSGFRWRIEDGQSINVWTKPWLLRDNEFWVHLPILPGFEHIR------ 585
           +W+GI    + + +   + + +G+ +  W   W   D+   +  P L      +      
Sbjct: 194 LWKGIRMNWELVSNRLVFIVGNGRRVRFWRDKW-CGDSPLCLSFPSLFALTVDKEESVAD 252

Query: 586 VSDLILTHGARAWNLPLIHGLFN-------PSIVEIITSIPLATNVQDDILIWHWTDSGI 638
           V D +   G   WN P     FN        S +E +    +  +V+D +    WT++  
Sbjct: 253 VWDSLAEGGWGGWN-PCFLRAFNDWEVEEASSFMERLHRSRVIEDVEDRV---SWTET-- 306

Query: 639 YSMKSGHRIVASLYVDIEDAWRSSFWKAL-WSMKIPPKVRHFLW 681
              KSG   V SLY+ IE    + F  +L W++ + PK+  F W
Sbjct: 307 ---KSGKFSVKSLYLAIEVGGSARFPSSLIWNVNVQPKISFFAW 347


>GSVIVT01004860001 assembled CDS
          Length = 1243

 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 98/236 (41%), Gaps = 42/236 (17%)

Query: 443 SILVELQRLMNSYWW-----GGKMRWLSWERLCVAKEEXGLGFRHLRSFNLALLGKRYWR 497
           S+   L++L   + W     G K   + WE +C  KE+ GLG R L   N ALLGK  WR
Sbjct: 4   SVARRLEKLQRDFLWEGANGGKKAHLVKWEVVCADKEKGGLGLRKLACLNKALLGKWIWR 63

Query: 498 FLHNTNSLXXXXXXXXXXPSRNFLSAGVGRDPSFVWR--------GICAAKDAICSGFRW 549
           F      +            +  L A  G++  F WR        G+   K+ I   F W
Sbjct: 64  FARAKEDIW-----------KKVLEAKYGQE-DFGWRTRKANGVFGVGVWKE-ILKEFAW 110

Query: 550 -------RIEDGQSINVWTKPWLLRD--NEFWVHLPILPGFEHIRVSDL-ILTHGARAWN 599
                  ++  G  I  W  PW   +  ++ + +L  +    ++ V ++     G   WN
Sbjct: 111 CWENMVFKVGKGNKIRFWIDPWCGNNVPSQSFPNLFSMAAQRNVTVEEMWDQNFGQGGWN 170

Query: 600 LPLIHGLFNPSIVEIITSIPLA-----TNVQDDILIWHWTDSGIYSMKSGHRIVAS 650
           L  +   FN   ++++ ++ +        +++  +IW     G++ +K  + ++AS
Sbjct: 171 LRFLRA-FNDWELDMVGNLLVEFREHRVTLEEHSVIWKEGGDGLFRVKRAYSVLAS 225


>GSVIVT01001301001 assembled CDS
          Length = 325

 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 5/110 (4%)

Query: 394 IFSFLKDXVRKLVSGWNQKLLSKAGKEVLIKAVAQAIPSFCMSSFLISVSILVELQRLMN 453
           ++  +++ +RK  + W  + +SK G+  LI +   ++P + MS   +   + + L+R+  
Sbjct: 160 VWDGVEERMRKKSARWKSQYISKGGRITLIWSTLASMPIYFMSMLSMPRKVRLRLERIQR 219

Query: 454 SYWWGG-----KMRWLSWERLCVAKEEXGLGFRHLRSFNLALLGKRYWRF 498
            + WGG     K+  + W+ +C+ K   GLG + L   N  LL K  WRF
Sbjct: 220 DFLWGGGALERKLHLVRWDLVCLEKCNGGLGVKSLSILNKTLLCKWSWRF 269


>GSVIVT01032339001 assembled CDS
          Length = 235

 Score = 52.8 bits (125), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 5/102 (4%)

Query: 409 WNQKLLSKAGKEVLIKAVAQAIPSFCMSSFLISVSILVELQRLMNSYWWGGKM-----RW 463
           W ++ +SK G+   IK++  ++P + +S F +S  + + L+++  ++ WGG M     + 
Sbjct: 2   WRRQYISKGGRLTPIKSMLSSLPIYFISLFQMSRRVRLRLEKIYRNFLWGGGMLGNKPQL 61

Query: 464 LSWERLCVAKEEXGLGFRHLRSFNLALLGKRYWRFLHNTNSL 505
           + W+ +C+ K + GL  R L S N+AL+ K  W F    ++ 
Sbjct: 62  VKWDIVCLDKRKGGLRVRCLNSLNMALICKWIWCFYKEMDAF 103