Jatropha Genome Database

JMS23C14r.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JMS23C14r.10 - phase: 0 /partial
         (167 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036290001 assembled CDS                                       201   1e-52

>GSVIVT01036290001 assembled CDS
          Length = 871

 Score =  201 bits (511), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 116/165 (70%), Positives = 128/165 (77%), Gaps = 14/165 (8%)

Query: 13  ISPLLLAVLLDESKEKVCIPRGDAWSVHKFGGTCVGTSERIKNVAEIIVNDGSEGKLVVV 72
           IS  ++ V LD+S EKV +P+GD WSVHKFGGTCVGTSERIKNVAEIIV D SE KLVVV
Sbjct: 18  ISASVMDVSLDKSMEKVQLPKGDNWSVHKFGGTCVGTSERIKNVAEIIVKDDSERKLVVV 77

Query: 73  SAMSKVTDMMYDLIYKAQSRDDSYIAAVDAVFEKHRLTAMDLLDGEDLASFLSRLHHDVN 132
           SAMSKVTDMMYDLIYKAQSRDDSYI+AVDAV EKHRLTA+DLLDG+DLASFLSRLHHD+N
Sbjct: 78  SAMSKVTDMMYDLIYKAQSRDDSYISAVDAVLEKHRLTALDLLDGDDLASFLSRLHHDIN 137

Query: 133 NLKAMLRAIYI-------------GIGPLF-LSLLDHTVRVNGFD 163
            +K MLRAIYI             G G L+   +L   VR  G D
Sbjct: 138 EIKEMLRAIYIAGHASELFSDIIVGHGELWSAQMLSSVVRKKGID 182