Jatropha Genome Database

JHL02J17r.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JHL02J17r.10 + phase: 2 /partial/short
         (40 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022436001 assembled CDS                                        50   2e-07

>GSVIVT01022436001 assembled CDS
          Length = 354

 Score = 50.1 bits (118), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/27 (77%), Positives = 26/27 (96%)

Query: 1   SSKVSEAIRSRCLNMRINAPSEEQVRK 27
           SSKV+EA+RSRCLN+RINAP+EEQ+ K
Sbjct: 170 SSKVTEAVRSRCLNIRINAPTEEQITK 196