Jatropha Genome Database

JcSR479173f.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcSR479173f.10 + phase: 0 /partial
         (194 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30076.m004699 importin alpha, putative                                190   2e-48
30128.m008884 importin alpha, putative                                 56   8e-08

>30076.m004699 importin alpha, putative
          Length = 1365

 Score =  190 bits (96), Expect = 2e-48
 Identities = 147/164 (89%)
 Strand = Plus / Plus

                                                                       
Query: 19  atggttgcaggtgtctggtctgaagaacagaattcacagcttgaggcaacaactcatttc 78
           |||||||||||||| ||||| |||||  ||||| ||||||| |||||||| |||||||||
Sbjct: 1   atggttgcaggtgtttggtcagaagacaagaatgcacagctcgaggcaaccactcatttc 60

                                                                       
Query: 79  cgaaagctgctctctatagagcgcagtcctccaatcaatgaagttgtgcaagctggtgtt 138
           |||||||||||||| ||||| || ||||| ||||||||||||||||| ||| | || |||
Sbjct: 61  cgaaagctgctctcaatagaacggagtcccccaatcaatgaagttgtacaatccggcgtt 120

                                                       
Query: 139 gttcctcgtttcattgagttccttgcaaggaatgattttccaca 182
           ||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 121 gttcctcgtttcattgagttcctcgcaagggatgattttccaca 164


>30128.m008884 importin alpha, putative
          Length = 1596

 Score = 56.0 bits (28), Expect = 8e-08
 Identities = 76/92 (82%)
 Strand = Plus / Plus

                                                                       
Query: 55  cagcttgaggcaacaactcatttccgaaagctgctctctatagagcgcagtcctccaatc 114
           |||||||||||||| ||||| ||  ||||  |||| || || |||||||| |||||||| 
Sbjct: 265 cagcttgaggcaaccactcaatttagaaaattgctttcaatcgagcgcagccctccaatt 324

                                           
Query: 115 aatgaagttgtgcaagctggtgttgttcctcg 146
            | |||||  | ||||||||||||||||||||
Sbjct: 325 gaggaagtcatacaagctggtgttgttcctcg 356